Supplementary data Haplotypes of four bolting time genes used in this study and markers derived thereof. Supplementary Table 1 Gene Allele Phenotype Origin Sequence Variation/ Putative Effect Marker Marker Marker Position Mutation Type (Ba ) biennial, in sugar reference sequence CAU4234 InDel exon 3, nt 302 BTC1 btc1a combination with beet and exon 4 nt 134 BvBBX19f (Bd ) annual, in sugar differs from by 11 11 amino acid CAU4234 InDel exon 3, nt 302 BTC1 BTC1d btc1a combination with beet synonymous and 3 changes and exon 4 nt polymorphisms 134 BvBBX19f annual, in sugar reference sequence CAU4235 CAPS, intron 1, nt 420 BvBBX19 BvBBX19f (B2 combination with beet to exon 4, nt 248 f) DraIII BTC1d biennial, in EMS differs from by 1 SNP in stop codon resulting CAU4235 CAPS, intron 1, nt 420 BvBBX19 BvBBX19h BvBBX19f (B2h) combination with mutant intron 2, nt 1 in truncated protein to exon 4, nt 248 DraIII BTC1d
Supplementary data Supplementary Table 1 Haplotypes of four bolting time genes used in this study and markers derived thereof. Gene Allele Phenotype Origin Sequence Variation/ Mutation Putative Effect Marker Marker Type Marker Position BTC1 btc1a (Ba ) biennial, in combination with BvBBX19f sugar beet reference sequence CAU4234 InDel exon 3, nt 302 and exon 4 nt 134 BTC1 BTC1d (Bd ) annual, in combination with BvBBX19f sugar beet differs from btc1a by 11 and 3 synonymous polymorphisms 11 amino acid changes CAU4234 InDel exon 3, nt 302 and exon 4 nt 134 BvBBX19 BvBBX19f (B2 f) annual, in combination with BTC1d sugar beet reference sequence CAU4235 CAPS, DraIII intron 1, nt 420 to exon 4, nt 248 BvBBX19 BvBBX19h (B2h) biennial, in combination with BTC1d EMS mutant differs from BvBBX19f by 1 SNP in intron 2, nt 1 stop codon resulting in truncated protein CAU4235 CAPS, DraIII intron 1, nt 420 to exon 4, nt 248