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Only two of the six last-16 ties on the two show courts were women's singles matches.
"I was looking forward to playing on one of the two big courts," Kerber said after her defeat by Garbine Muguruza.
"Maybe I will talk to them. This is not my decision at the end. It's the decision from all the others."
Meanwhile, French Open champion Jelena Ostapenko, 20, also queried the scheduling of her match against Elina Svitolina on one of the outside courts.
Asked if she was surprised, she said: "I mean, yes. Also, Elina is number four in the world. I think our match was a very interesting match for the people to watch. But I thought we would play on a bigger court."
World number one Andy Murray, Roger Federer and Venus Williams were given Centre Court for their last-16 matches with British women's number one Johanna Konta and former men's champions Rafael Nadal and Novak Djokovic on Court One.
Wimbledon chief Richard Lewis stated the schedule was based on fans' demand.
"I wouldn't say it's favouritism. I would say it's taking the marquee matches," he said.
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"It's not about male or female, in the end it's about which matches you feel the public and broadcasters want to see."
Speaking on BBC Radio 5 live, three-time champion Chris Evert questioned the lack of "equal representation".
"I think all women would like to see three of each to go along with the equal prize money," said the American.
"Fortunately for men's tennis and unfortunately for women's tennis this year the top four men are of very high marquee value, and it's hard to say that Djokovic should be on court two.
"But then I wonder about that argument because in the past there have been years when the women have been more attractive to watch, been bigger names, and they've still gone with the four men and two women."

The 46-year-old, who has won 12 medals, including two golds, will be hoping to create history as the sport makes its Paralympic debut.
London Games Maker Anne Dickins is also included alongside 2012 competitors Nick Beighton and Emma Wiggs.
Debutants Ian Marsden and Rob Oliver complete the GB squad.
All of the squad had secured their places thanks to their performances at the British Championships in Nottingham earlier this month, but had to wait for the British Paralympic Association to verify their selection.
Chippington appeared at her first Games in Seoul in 1988 and also competed in the pool in Barcelona, Atlanta, Sydney and Athens.
After retiring from swimming she took up canoeing in 2011 and has won world and European titles in the KL1 class.
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Dickins, 49, from Guildford, took up the sport after a chance meeting with a coach while volunteering in 2012.
The former endurance cyclist suffered a freak debilitating back injury in 2011 and recovered from a viral illness to win world gold in the KL3 category last month.
"I thought I couldn't do any more sport because of my injury, so to give back to sport I thought I would do some volunteering," she told BBC Sport.
"Not for one minute did I ever think I would be competitive in any sport, let alone one I hadn't done before. It's just been such a crazy, incredible four years."
Beighton, who lost both legs while serving in the Army in Afghanistan in 2009, rowed at the London Paralympics while Wiggs, who was left paralysed overnight while on a gap year in Australia, aged 18, was part of the sitting volleyball squad.
Marsden is a former world champion powerlifter, while Oliver broke his leg playing football in 2008 and had his leg amputated after 17 operations.
Great Britain is one of only two countries, along with Australia, to have qualified places in all six Paralympic events.
Squad: Nick Beighton (Men's KL2), Jeanette Chippington (Women's KL1), Anne Dickins (Women's KL3), Ian Marsden (Men's KL1), Rob Oliver (Men's KL3), Emma Wiggs (Women's KL2).
World number one Angelique Kerber said she was "really surprised" her Wimbledon match was put on court two as Monday's scheduling faced criticism.
[NEXT_CONCEPT]
Former swimmer turned canoeist Jeanette Chippington has been officially named to compete in her sixth Paralympics for Great Britain.