They were erected to glorify the Red Army's vital role in ousting the Nazis.
But many Poles say it also ushered in four decades of Soviet-inspired communism, and want the monuments to be displayed in historical context.
The plan could anger Russia, which has not been consulted. Relations between both countries are tense.
The Institute of National Remembrance (IPN) proposes to house the monuments in a park in the former Soviet base at Borne Sulinowo, a small town north-west of Warsaw, where they will be used for the purpose of teaching history.
Andrzej Zawistowski, director of the IPN's education department, said the plan includes 229 monuments that refer to "what we consider as untruth: gratitude for having given Poland independence."
Poland, now a western ally and Nato member, sees the Soviet domination following the end of the war as a period of oppression, and its relations with Moscow have been strained for some years.
Poland and Russia are loggerheads over a number of issues, notably Russia's policy on Ukraine and EU sanctions on Moscow.
The plan is diplomatically sensitive.
The Kremlin protested strongly when a Soviet monument was removed from the town of Pieniezno last year.
Russia says it exposed a lack of gratitude for the sacrifice of the Soviet troops who freed Poland from the Nazis. More than 20 million Soviet soldiers died in World War Two.
Moscow argues that Poland is obliged to protect all war memorials under a 1994 bilateral agreement with Russia.
But Poland says the agreement covers only cemeteries, which are not affected under the plan.
"The plan will include only monuments expressing the gratitude towards the Red Army, and it will not affect Soviet cemeteries," said Mr Zawistowski.
"The educational park will show these monuments within the right historical context," Mr Zawistowski said. "Educational parks and institutions of this type exist equally in other states such as Lithuania, Hungary or even Russia."
The institute says it will help with the removal of the monuments and their installation in the museum.
But it is up to city councils whether they want them cleared.

Patrick Sullivan, 25, a former French foreign Legionnaire and member of the republican splinter group, the Irish People's Liberation Organisation, was knifed to death in February 1992.
A west Belfast man was later convicted of his manslaughter.
His sister and brother met the police in Belfast on Friday morning.
Mr Sullivan was killed after confronting someone he suspected of anti-social behaviour in the Divis area.
He was stabbed in the neck and back and died from his injuries.
The family have always believed more than one attacker was involved and claim a post mortem examination that they have recently obtained backs up their assertion.
Patrick's sister, Margaret, and his brother, Seamus, accompanied by their solicitor, Padraig Ómuirigh , met detectives for an hour-long meeting on Friday.
The family would not reveal what had been said, but their solicitor said they hoped the new information they had would be enough to re-open the case.
"We had a constructive meeting with the police and hope to bring further information to them," said Mr Ómuirigh.
"The family have also lodged a complaint with the Police Ombudsman in relation to the standards of the original investigation and we also have a meeting with the ombudsman in the coming weeks."
When asked for a comment on the meeting, a police spokesman said: "We can confirm that local police met with members of the Sullivan family today."
The Police Ombudsman said: "We have received a complaint about the police investigation into the killing of Patrick Sullivan in Belfast in 1992.
"We are currently investigating the complaint, and investigators are due to meet Mr Sullivan's family on 30 August."
More than 200 monuments marking the Soviet army's liberation of Poland at the end of World War Two are to be moved to an open-air museum.
[NEXT_CONCEPT]
The family of a west Belfast man who was killed 20 years ago have called for a fresh investigation into his death.