The case was filed against the actor in 1998 when he was the honorary chairman of an export firm.
The firm reportedly could not pay its dues to an investor and its cheque bounced, which is illegal in India.
The court said that the actor was not involved in the daily management of the firm and hence he could not be held responsible for payment defaults.
Earlier, the actor was exempted from appearing in court due to his poor health.
Described by critics as the ultimate method actor in India, Kumar has won more awards than any other Bollywood star.
Over his long career, he won eight Filmfare awards, India's version of the Oscars.
Kumar has also served as a member of India's upper house of parliament.
Born Muhammad Yusuf Khan in 1922 in Peshawar, now in Pakistan, the actor changed his name to Dilip Kumar when he joined Bollywood.
The historical 1960 drama Mughal-e-Azam, in which he played the role of Prince Salim, is one of the biggest hits of Indian cinema.
He also acted in superhits like Ganga Jumna, Devdas, Andaz and Aan.
Seen as a legend of Indian cinema, Kumar passed over a lead role in David Lean's Lawrence of Arabia.
The part of Sherif Ali went to Egyptian actor Omar Sharif, who was nominated for an Oscar for the 1962 epic.

Falls in clothing and food prices were the main contributors to the change in the rate, the Office for National Statistics (ONS) said.
The ONS said the rate was also affected by a smaller rise in air fares in June than a year ago.
Bank of England governor Mark Carney has said he expects inflation to remain low in the immediate short term.
But the Bank expects it to start picking up around the turn of the year.
The rate of Retail Price Index (RPI) inflation - which includes housing costs such as mortgage interest payments and council tax - was 1% in June, unchanged from May.
"Inflation has continued its pattern of recent months, when prices have been very little changed on the previous year," said Philip Gooding from the ONS.
"The headline rate for June has dropped very slightly on May, back to zero, thanks to small downwards effects from movements in clothing and food prices and air fares."
The CPI rate has been hovering around zero since February, and moved into negative territory in April for the first time on record, dropping to -0.1%.
Howard Archer, chief UK economist at Global Insight, said the latest figure was good news for consumers.
"With earnings growth currently seeing clear improvement and employment high and rising, purchasing power is currently in rude heath," he added.
While flat or low inflation can be good news for consumers, a prolonged period of negative inflation is generally perceived as harmful to an economy. The fear is that people will defer spending in the hope that goods or services will become cheaper later.
The current inflation figure is well below the Bank of England's target of around 2%.
Core inflation, which excludes energy, food, alcohol and tobacco prices, fell last month to 0.8%. That was down from 0.9% and the joint-lowest rate since 2001.
"The data therefore raise questions over the whether underlying price pressures are really picking up to the extent than the Bank of England is anticipating," said Chris Williamson, chief UK economist at Markit.
He said that attention would now turn to Wednesday's wage growth data,
"The Bank of England needs to determine whether pay growth will continue to accelerate as firms compete for staff, or whether low inflation will keep the overall rate of increase below levels that would normally worry the monetary policy committee into hiking interest rates," he added.
A Mumbai court has cleared veteran Bollywood actor Dilip Kumar, 94, in the 18-year-old case of a bounced cheque.
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The rate of UK Consumer Prices Index inflation fell to 0% in June, from 0.1% in May, official figures show.