RNAseq, the measure of abundance of transcribed genes at a particular cell state is one of the most common assays done with next gen sequencing. That&#x27;s the big one then of course there is also miRs, transcription factors, methylation, histone marks, chromatin conformation capture.<p>As someone with a CS background who has worked almost 5 years in bioinformatics, one thing to realise is if you think something obvious is not done, either you&#x27;re missing the right search term on pubmed or there&#x27;s some horrible lab issue that makes it really hard (and we need a new assay&#x2F;tech)