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Oblivion Mod Manager (a.k.a. OBMM Oblivion Mod Manager) is the fantastic work of Timeslip. Not only can you install and organize mods, but also you can organize your load order and implement multiple types of archive invalidation, with ease.
OBMM unpacked Qarl's in something like a minute as opposed to the 15 for NMM. Also regarding Wrye Bash, the whole point of it is that instead of unzipping your mods in zip files into your oblivion data, meshes, textures, etc folders, it lets you load the files through wyre bash in a way that doesnt override any files and is easy to manage.