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Regions of the brain that may be affected by depression include the hypothalamus, hippocampus, anterior cingulate gyrus, amygdala, and all parts of the limbic system (which is involved with emotion formation as well as processing, learning, and memory). Certain parts of the brain associated with emotion, memory, and learning, particularly the prefrontal cortex and the hippocampus, can shrink in size. 2  This might explain some of the emotional changes observed in people with depression.
1 Increase the amount of plaque in blood vessels and increase the possibility of blood clots forming, both of which puts your heart-and your brain-at risk.  Increase the amount of triglycerides in your system, which slows down the amount of oxygen going to your brain, and the excess of which has been linked to depression.