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1 The eukaryotic DNA is organized in one or more linear molecules, called chromosomes, which are associated with histone proteins. 2  All chromosomal DNA is stored in the cell nucleus, separated from the cytoplasm by a membrane. 3  Some eukaryotic organelles such as mitochondria also contain some DNA. Some eukaryotic cells (plant cells and fungal cells) also have a cell wall. 2  Inside the cell is the cytoplasmic region that contains the genome (DNA), ribosomes and various sorts of inclusions. 3  The genetic material is freely found in the cytoplasm.
Most of an organism's DNA is stored in chromosomes inside the nucleus. Mitochondria. Mitochondria are structures inside of a cell where chemical energy is generated from food. A small amount of DNA in eukaryotes, called mitochondrial DNA or mtDNA, is housed in the mitochondria. Single-Celled Organisms Prokaryotes are single-celled organisms that lack a nucleus.