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Gastrointestinal Causes of Yellow Diarrhea. There are a few disorders of the stomach and bowel which can cause yellow diarrhea. It can be quite complicated to make a diagnosis as the symptoms can overlap, therefore if you develop yellow diarrhea and you have other symptoms you should see a doctor and have some tests done.
Bile salt-related causes of yellow stool. Yellow stool may be caused by conditions that decrease the amount of bile salts reaching the intestines including: Biliary atresia (a condition present at birth involving abnormal bile duct development). Biliary cirrhosis (inflammation of bile ducts in the liver).ellow stool can also be caused by conditions that interfere with the ability of the intestines to absorb fat: Celiac disease (a severe sensitivity to gluten from wheat and other grains that causes intestinal damage). Cystic fibrosis. Parasite infections such as Giardia infection.