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Cut the dead or diseased stalk back to the base of the plant. Cut damaged stalks below the damaged part to leave the foliage to feed the plant. Prune the stalks back to the base of the plant in late fall when the lilies have stopped blooming and the foliage is dying off. Pruning shears.
When To Prune. You can prune off diseased or dead (black or dark gray) wood any time of the year. But roses need a major pruning in late winter or early spring when they're first starting to send out new growth.