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Some causes of slightly lower-than-usual body temperature include infections, heavy alcohol use, and hypothyroidism. Occasional low temperatures are common since body temperature changes throughout the day, the Mayo Clinic says.
A lower-than-normal level can be due to a vitamin D deficiency, which can result from: 1  Lack of exposure to sunlight. 2  Lack of enough vitamin D in the diet. 3  Liver and kidney diseases.  Poor food 1  absorption. Use of certain medicines, including phenytoin, phenobarbital, and rifampin.