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This condition can be caused by certain medications and by infections. In some cases, it is caused by a cancer or precancerous condition. Myelofibrosis, bone marrow scarring that can result from various hematologic cancers, typically leads to low blood counts. Pancytopenia can also be caused by aplastic anemia, a bone marrow failure disorder that affects blood cell production.
Quick Answer. Diseases that cause low white blood cell counts include aplastic anemia, human immunodeficiency virus, leukemia and lupus, according to Mayo Clinic. Other causes include rheumatoid arthritis, Crohn's disease and infections such as tuberculosis, reports MedlinePlus.