Microbiology
The branches of microbiology can be classified into pure and applied sciences, or divided according to taxonomy, as is the case with bacteriology, mycology, protozoology, and phycology. There is considerable overlap between the specific branches of microbiology with each other and with other disciplines, and certain aspects of these branches can extend beyond the traditional scope of microbiology
While some fear microbes due to the association of some microbes with various human diseases, many microbes are also responsible for numerous beneficial processes such as industrial fermentation (e.g. the production of alcohol, vinegar and dairy products), antibiotic production and act as molecular vehicles to transfer DNA to complex organisms such as plants and animals. Scientists have also exploited their knowledge of microbes to produce biotechnologically important enzymes such as Taq polymerase, reporter genes for use in other genetic systems and novel molecular biology techniques such as the yeast two-hybrid system.
Mesopelagic zone
Very little is known about the microbial community of the mesopelagic zone because it is a difficult part of the ocean to study. Recent work using DNA from seawater samples emphasized the importance of viruses and microbes role in recycling organic matter from the surface ocean, known as the microbial loop. These many microbes can get their energy from different metabolic pathways. Some are autotrophs, heterotrophs, and a 2006 study even discovered chemoautotrophs. This chemoautotrophic Archaea crenarchaeon "Candidatus" can oxidize ammonium as their energy source without oxygen, which could significantly impact the nitrogen and carbon cycles. One study estimates these ammonium-oxidizing bacteria, which are only 5% of the microbial population, can annually capture 1.1 Gt of organic carbon.