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#!/bin/bash |
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source scripts/utils.sh echo -n |
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function activate_gitannex { |
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_conda_env=$(git config --file scripts/config/datalad_config --get datalad.conda.conda-env || echo -n) |
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if [[ ! -z "${_conda_env}" ]] |
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then |
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_modules=$(git config --file scripts/config/datalad_config --get datalad.conda.modules || echo -n) |
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if [[ -z "$(which conda)" ]] && [[ ! -z "${_modules}" ]] |
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then |
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module load ${_modules} 2>/dev/null |
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eval "$(conda shell.bash hook)" |
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fi |
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conda activate ${_conda_env} >/dev/null 2>&1 || eval "$(conda shell.bash hook)" |
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conda activate ${_conda_env} |
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exit_on_error_code "Failed to init git-annex conda env" |
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fi |
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} |
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function install_datalad { |
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init_venv --name venv --prefix .tmp/ |
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exit_on_error_code "Failed to init venv" |
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datalad --version >/dev/null 2>&1 || python3 -m pip install -r scripts/requirements_datalad.txt |
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exit_on_error_code "Failed to install datalad requirements: pip install" |
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} |
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which git-annex || activate_gitannex |
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datalad --version >/dev/null 2>&1 || install_datalad |
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exit_on_error_code "Failed to install datalad requirements: pip install" |
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[[ -d "$(realpath bin/)" ]] && export PATH="${PATH}:$(realpath bin)" |
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datalad "$@" |
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