The size and scope of cutting-edge scientific simulations are growing much faster than the I/O subsystems of their runtime environments, not only making I/O the primary bottleneck, but also consuming space that pushes the storage capacities of many computing facilities. These problems are exacerbated by the need to perform data-intensive analytics applications, such as querying the dataset by variable and spatio-temporal constraints, for what current database technologies commonly build query indices of size greater than that of the raw data. To help solve these problems, we present a parallel query-processing engine that can handle both range queries and queries with spatio-temporal constraints, on B-spline compressed data with user-controlled accuracy. Our method adapts to widening gaps between computation and I/O performance by querying on compressed metadata separated into bins by variable values, utilizing Hilbert space-filling curves to optimize for spatial constraints and aggregating data access to improve locality of per-bin stored data, reducing the false positive rate and latency bound I/O operations (such as seek) substantially. We show our method to be efficient with respect to storage, computation, and I/O compared to existing database technologies optimized for query processing on scientific data.
['Zhenhuan Gong', 'Sriram Lakshminarasimhan', 'John Jenkins', 'Hemanth Kolla', 'Stephane Ethier', 'J. H. Chen', 'Robert B. Ross', 'Scott Klasky', 'Nagiza F. Samatova']
Multi-level Layout Optimization for Efficient Spatio-temporal Queries on ISABELA-compressed Data