Replication data for: Multilevel Agrobiodiversity and Conservation of Andean Potatoes in Central Peru
<|begin_of_text|><|start_header_id|>system<|end_header_id|> You are a research archivist expert in dataset metadata. Answer the question truthfully.  <|eot_id|><|start_header_id|>user<|end_header_id|> Here is the Description of a dataset. Description:'A population consisting of 989 samples belonging to 8 farmer households (ISC-01 to ISC-08) was characterized using 18 polymorphic single sequence repeat (SSR; microsatellite) markers covering the whole genome (Ghislain et al 2004). Standard procedures, including DNA extraction with DNeasy 96 plant kits, high-throughput genotyping with a LI-COR 4300 DNA Analysis System,and SSR allele scoring with SAGA Generation 2 software (LI-COR), were applied. Standardized dissimilarity analysis for ISC-01 to ISC-08 and the regional population were conducted using the Jaccard coefficient and UPGMA clustering method with NTSYS-pc 2.1 software. Dissimilarity trees (dendrograms) were built with the same data using an unweighted neighbor joining clustering method for a dissimilarity matrix calculated with the Jaccard coefficient using DARwin 4.0 and NTSYS' . Please return only a json list of at most 3 Keywords corresponding to the Description:.<|eot_id|><|start_header_id|>assistant<|end_header_id|> {"Answer" : ["Huancavelica","In situ conservation","Molecular markers","Native cultivars","Peru","Ploidy","Potato","Single sequence repeat (SSR) markers"]} <|eot_id|>
 Here is the Description of a dataset. Description:'A population consisting of 989 samples belonging to 8 farmer households (ISC-01 to ISC-08) was characterized using 18 polymorphic single sequence repeat (SSR; microsatellite) markers covering the whole genome (Ghislain et al 2004). Standard procedures, including DNA extraction with DNeasy 96 plant kits, high-throughput genotyping with a LI-COR 4300 DNA Analysis System,and SSR allele scoring with SAGA Generation 2 software (LI-COR), were applied. Standardized dissimilarity analysis for ISC-01 to ISC-08 and the regional population were conducted using the Jaccard coefficient and UPGMA clustering method with NTSYS-pc 2.1 software. Dissimilarity trees (dendrograms) were built with the same data using an unweighted neighbor joining clustering method for a dissimilarity matrix calculated with the Jaccard coefficient using DARwin 4.0 and NTSYS' . Please return only a json list of at most 3 Keywords corresponding to the Description:.
A population consisting of 989 samples belonging to 8 farmer households (ISC-01 to ISC-08) was characterized using 18 polymorphic single sequence repeat (SSR; microsatellite) markers covering the whole genome (Ghislain et al 2004). Standard procedures, including DNA extraction with DNeasy 96 plant kits, high-throughput genotyping with a LI-COR 4300 DNA Analysis System,and SSR allele scoring with SAGA Generation 2 software (LI-COR), were applied. Standardized dissimilarity analysis for ISC-01 to ISC-08 and the regional population were conducted using the Jaccard coefficient and UPGMA clustering method with NTSYS-pc 2.1 software. Dissimilarity trees (dendrograms) were built with the same data using an unweighted neighbor joining clustering method for a dissimilarity matrix calculated with the Jaccard coefficient using DARwin 4.0 and NTSYS
Huancavelica; In situ conservation; Molecular markers; Native cultivars; Peru; Ploidy; Potato; Single sequence repeat (SSR) markers