Prediction and Comparative Analysis of CTCF Binding Sites based on a First Principle Approach [Research Data]
<|begin_of_text|><|start_header_id|>system<|end_header_id|> You are a research archivist expert in dataset metadata. Answer the question truthfully.  <|eot_id|><|start_header_id|>user<|end_header_id|> Here is the Description of a dataset. Description:'The file contains the CTCF-DNA binding sites for complete genome of Homo sapiens (human), Mus musculus (mouse), Sus scrofa (pig), Capra hircus (goat), Aedes aegypti (dengue and yellow fever mosquito) and Drosophila melanogaster (fruit fly) using electronic nucleotide alignment. The data analysis is described in NN Oiwa, K Li, CE Cordeiro and DW Heermann, 2022 [arXiv:2110.10508]. Detailed description of the Electronic Nucleotide Alignment method can be found in NN Oiwa, CE Cordeiro, DW Heerman (2016). We also add Caenorhabditis elegans (worm), Plasmodium falciparum  (protozoan) and Arabidopsis thaliana (plant) as negative test, since there is not CTCF in these species' . Please return only a json list of at most 3 Keywords corresponding to the Description:.<|eot_id|><|start_header_id|>assistant<|end_header_id|> {"Answer" : ["CTCF","extended ladder model","zinc finger"]} <|eot_id|>
 Here is the Description of a dataset. Description:'The file contains the CTCF-DNA binding sites for complete genome of Homo sapiens (human), Mus musculus (mouse), Sus scrofa (pig), Capra hircus (goat), Aedes aegypti (dengue and yellow fever mosquito) and Drosophila melanogaster (fruit fly) using electronic nucleotide alignment. The data analysis is described in NN Oiwa, K Li, CE Cordeiro and DW Heermann, 2022 [arXiv:2110.10508]. Detailed description of the Electronic Nucleotide Alignment method can be found in NN Oiwa, CE Cordeiro, DW Heerman (2016). We also add Caenorhabditis elegans (worm), Plasmodium falciparum  (protozoan) and Arabidopsis thaliana (plant) as negative test, since there is not CTCF in these species' . Please return only a json list of at most 3 Keywords corresponding to the Description:.
The file contains the CTCF-DNA binding sites for complete genome of Homo sapiens (human), Mus musculus (mouse), Sus scrofa (pig), Capra hircus (goat), Aedes aegypti (dengue and yellow fever mosquito) and Drosophila melanogaster (fruit fly) using electronic nucleotide alignment. The data analysis is described in NN Oiwa, K Li, CE Cordeiro and DW Heermann, 2022 [arXiv:2110.10508]. Detailed description of the Electronic Nucleotide Alignment method can be found in NN Oiwa, CE Cordeiro, DW Heerman (2016). We also add Caenorhabditis elegans (worm), Plasmodium falciparum  (protozoan) and Arabidopsis thaliana (plant) as negative test, since there is not CTCF in these species
CTCF; extended ladder model; zinc finger