10.7554/eLife.22114.012Figure 3—figure supplement 6.Linkage analysis for the simple single locus association test.Pairwise linkage analysis (R2) of the sites used for the simple single locus association test among the 54 accessions of the FLM haplotype set. Only the 109 biallelic sites of the 119 sites are shown. Red circles show the sites PRO1, PRO2, and two biallelic SNPs of the nucleotide triplet INT6 (at bp +3975 and +3976). Position is set to 1 according to the A of the ATG start codon.DOI: http://dx.doi.org/10.7554/eLife.22114.012