Genomic DNA was extracted following the protocol of Geslin et al. (10). The purity and quantity of the DNA were measured using Nanodrop and Qubit instruments (Thermo, Fisher Scientific). Shotgun libraries were constructed using the Nextera XT kit and sequenced as one of ten pooled, barcoded libraries on a MiSeq (all from Illumina) using 500 cycles generating 2 × 250 bp paired-end reads. The genomes assembled de novo by CLC Genomics Workbench 7.0.4, using trimming default settings, automatic word size, a bubble size corresponding to the average length of the input reads, a minimum contig length of 1000 bp, and reads mapped back to the contigs.