serial_number
int64 1
315
| task_id
stringlengths 21
21
| task
stringlengths 421
509
| image_sequence
stringlengths 408
924
| json_data
stringlengths 3.77k
7.08k
| num_steps
int64 11
24
| num_images
int64 11
24
| image_paths
stringlengths 839
1.86k
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stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|
1
|
3dslicer_endtoend_001
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_37_Layout_FourUp_View.png → BMRI_42_ScreenCapture_Module.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_001",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 15: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_1_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 15
| 15
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
2
|
3dslicer_endtoend_002
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, compute ROI statistics for mean and standard deviation, toggle slice intersections and rotate 3D view for visualization, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png
|
{
"id": "3dslicer_endtoend_002",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, compute ROI statistics for mean and standard deviation, toggle slice intersections and rotate 3D view for visualization, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 3: Changing magnification level"
},
{
"step": 4,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 4: Navigating through content"
},
{
"step": 5,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 7,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 12: Inputting or editing text content"
},
{
"step": 13,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 13: Inputting or editing text content"
},
{
"step": 14,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 17,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 17: Creating visual annotations or measurements"
},
{
"step": 18,
"action": "COMPLETE",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_2_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
3
|
3dslicer_endtoend_003
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, place two fiducial points (AC and PC) and compute the distance, overlay segmentation model on the volume rendering, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_12_Select_Volume_Rendering_Tool.png
|
{
"id": "3dslicer_endtoend_003",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, place two fiducial points (AC and PC) and compute the distance, overlay segmentation model on the volume rendering, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 11,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 12: Creating visual annotations or measurements"
},
{
"step": 13,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 13: Inputting or editing text content"
},
{
"step": 14,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 14: Inputting or editing text content"
},
{
"step": 15,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 18,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 19,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 19: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 20,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 20: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 21,
"action": "COMPLETE",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 21: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_3_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 21
| 21
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
4
|
3dslicer_endtoend_004
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, create a rectangular ROI to isolate temporal lobe structures, display segmented model surface and adjust lighting, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_004",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, create a rectangular ROI to isolate temporal lobe structures, display segmented model surface and adjust lighting, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 14: Creating visual annotations or measurements"
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 16: Inputting or editing text content"
},
{
"step": 17,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_4_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
5
|
3dslicer_endtoend_005
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, draw a circular ROI over the left ventricle and measure intensity, toggle slice intersections and rotate 3D view for visualization, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_46_SaveScene_Dialog.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_005",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, draw a circular ROI over the left ventricle and measure intensity, toggle slice intersections and rotate 3D view for visualization, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 6,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 15: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_5_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 15
| 15
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
6
|
3dslicer_endtoend_006
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, run bias correction to remove shading artifacts, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, add annotation label to highlight ROI region, toggle slice intersections and rotate 3D view for visualization, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_42_ScreenCapture_Module.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_006",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, run bias correction to remove shading artifacts, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, add annotation label to highlight ROI region, toggle slice intersections and rotate 3D view for visualization, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 12,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 12: Creating visual annotations or measurements"
},
{
"step": 13,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 13: Creating visual annotations or measurements"
},
{
"step": 14,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 14: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_6_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 14
| 14
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
7
|
3dslicer_endtoend_007
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, add annotation label to highlight ROI region, switch to Four-up layout and capture slice intersections, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_37_Layout_FourUp_View.png → BMRI_46_SaveScene_Dialog.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_007",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, add annotation label to highlight ROI region, switch to Four-up layout and capture slice intersections, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_7_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
8
|
3dslicer_endtoend_008
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, normalize intensity levels across slices, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_12_Select_Volume_Rendering_Tool.png
|
{
"id": "3dslicer_endtoend_008",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, normalize intensity levels across slices, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 9,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 12: Inputting or editing text content"
},
{
"step": 13,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 13: Inputting or editing text content"
},
{
"step": 14,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "COMPLETE",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_8_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
9
|
3dslicer_endtoend_009
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, toggle slice intersections and rotate 3D view for visualization, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_009",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, toggle slice intersections and rotate 3D view for visualization, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 11,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 12: Creating visual annotations or measurements"
},
{
"step": 13,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 16,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 16: Inputting or editing text content"
},
{
"step": 17,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_9_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
10
|
3dslicer_endtoend_010
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, normalize intensity levels across slices, convert segmentation to 3D model for visualization, use the Paint tool to refine segmentation boundaries, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_010",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, normalize intensity levels across slices, convert segmentation to 3D model for visualization, use the Paint tool to refine segmentation boundaries, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 8,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 14,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 17,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_10_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
11
|
3dslicer_endtoend_011
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, compute ROI statistics for mean and standard deviation, switch to Four-up layout and capture slice intersections, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_37_Layout_FourUp_View.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_011",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, compute ROI statistics for mean and standard deviation, switch to Four-up layout and capture slice intersections, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 8,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 15,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 18,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 19,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 19: Creating visual annotations or measurements"
},
{
"step": 20,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 20: Creating visual annotations or measurements"
},
{
"step": 21,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 21: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_11_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 21
| 21
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
12
|
3dslicer_endtoend_012
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, threshold ventricles in the segmentation editor, compute ROI statistics for mean and standard deviation, enable 3D rendering and set Brain preset opacity to 0.3, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_012",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, threshold ventricles in the segmentation editor, compute ROI statistics for mean and standard deviation, enable 3D rendering and set Brain preset opacity to 0.3, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 10,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 12: Creating visual annotations or measurements"
},
{
"step": 13,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 18,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 19,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 19: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 20,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 20: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 21,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 21: Creating visual annotations or measurements"
},
{
"step": 22,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 22: Creating visual annotations or measurements"
},
{
"step": 23,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 23: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 24,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 24: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_12_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 24
| 24
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
13
|
3dslicer_endtoend_013
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, compute ROI statistics for mean and standard deviation, toggle slice intersections and rotate 3D view for visualization, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_46_SaveScene_Dialog.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_013",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, compute ROI statistics for mean and standard deviation, toggle slice intersections and rotate 3D view for visualization, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 5: Creating visual annotations or measurements"
},
{
"step": 6,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 15,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 17: Creating visual annotations or measurements"
},
{
"step": 18,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_13_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
14
|
3dslicer_endtoend_014
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, use the Paint tool to refine segmentation boundaries, create a rectangular ROI to isolate temporal lobe structures, enable 3D rendering and set Brain preset opacity to 0.3, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_014",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, use the Paint tool to refine segmentation boundaries, create a rectangular ROI to isolate temporal lobe structures, enable 3D rendering and set Brain preset opacity to 0.3, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 9,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 14,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 16,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 17: Creating visual annotations or measurements"
},
{
"step": 18,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 18: Creating visual annotations or measurements"
},
{
"step": 19,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 19: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 20,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 20: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_14_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 20
| 20
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
15
|
3dslicer_endtoend_015
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, draw a circular ROI over the left ventricle and measure intensity, display segmented model surface and adjust lighting, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_46_SaveScene_Dialog.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_015",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, draw a circular ROI over the left ventricle and measure intensity, display segmented model surface and adjust lighting, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 18,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 19,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 19: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_15_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 19
| 19
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
16
|
3dslicer_endtoend_016
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, create a rectangular ROI to isolate temporal lobe structures, toggle slice intersections and rotate 3D view for visualization, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_016",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, create a rectangular ROI to isolate temporal lobe structures, toggle slice intersections and rotate 3D view for visualization, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 12,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 14,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 14: Creating visual annotations or measurements"
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_16_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
17
|
3dslicer_endtoend_017
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_12_Select_Volume_Rendering_Tool.png
|
{
"id": "3dslicer_endtoend_017",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 4: Changing magnification level"
},
{
"step": 5,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 5: Navigating through content"
},
{
"step": 6,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 8,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 10: Inputting or editing text content"
},
{
"step": 11,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 11: Inputting or editing text content"
},
{
"step": 12,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "COMPLETE",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 15: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_17_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 15
| 15
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
18
|
3dslicer_endtoend_018
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, compute ROI statistics for mean and standard deviation, overlay segmentation model on the volume rendering, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_42_ScreenCapture_Module.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_018",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, compute ROI statistics for mean and standard deviation, overlay segmentation model on the volume rendering, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 9,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 18,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 18: Creating visual annotations or measurements"
},
{
"step": 19,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 19: Creating visual annotations or measurements"
},
{
"step": 20,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 20: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 21,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 21: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_18_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 21
| 21
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
19
|
3dslicer_endtoend_019
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_46_SaveScene_Dialog.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_019",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 8,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 16,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_19_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
20
|
3dslicer_endtoend_020
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, normalize intensity levels across slices, convert segmentation to 3D model for visualization, threshold ventricles in the segmentation editor, compute ROI statistics for mean and standard deviation, switch to Four-up layout and capture slice intersections, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_42_ScreenCapture_Module.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_020",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, normalize intensity levels across slices, convert segmentation to 3D model for visualization, threshold ventricles in the segmentation editor, compute ROI statistics for mean and standard deviation, switch to Four-up layout and capture slice intersections, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 4,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 5: Creating visual annotations or measurements"
},
{
"step": 6,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 8,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_20_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
21
|
3dslicer_endtoend_021
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, use the Paint tool to refine segmentation boundaries, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_37_Layout_FourUp_View.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png
|
{
"id": "3dslicer_endtoend_021",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, use the Paint tool to refine segmentation boundaries, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 12: Inputting or editing text content"
},
{
"step": 13,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 13: Inputting or editing text content"
},
{
"step": 14,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 17,
"action": "COMPLETE",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_21_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
22
|
3dslicer_endtoend_022
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, draw a circular ROI over the left ventricle and measure intensity, switch to Four-up layout and capture slice intersections, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_37_Layout_FourUp_View.png → BMRI_46_SaveScene_Dialog.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_022",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, draw a circular ROI over the left ventricle and measure intensity, switch to Four-up layout and capture slice intersections, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 17,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_22_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
23
|
3dslicer_endtoend_023
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_023",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 13,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_23_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
24
|
3dslicer_endtoend_024
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, add annotation label to highlight ROI region, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_46_SaveScene_Dialog.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_024",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, add annotation label to highlight ROI region, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 12: Creating visual annotations or measurements"
},
{
"step": 13,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 14: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_24_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 14
| 14
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
25
|
3dslicer_endtoend_025
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, add annotation label to highlight ROI region, display segmented model surface and adjust lighting, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_42_ScreenCapture_Module.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_025",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, add annotation label to highlight ROI region, display segmented model surface and adjust lighting, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 6,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 14: Creating visual annotations or measurements"
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_25_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
26
|
3dslicer_endtoend_026
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, use the Paint tool to refine segmentation boundaries, draw a circular ROI over the left ventricle and measure intensity, switch to Four-up layout and capture slice intersections, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_37_Layout_FourUp_View.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_026",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, apply histogram equalization for better contrast, use the Paint tool to refine segmentation boundaries, use the Paint tool to refine segmentation boundaries, draw a circular ROI over the left ventricle and measure intensity, switch to Four-up layout and capture slice intersections, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 14,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 14: Inputting or editing text content"
},
{
"step": 15,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 15: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_26_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 15
| 15
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
27
|
3dslicer_endtoend_027
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_027",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, create a new segmentation for white and gray matter regions, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 17: Inputting or editing text content"
},
{
"step": 18,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_27_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
28
|
3dslicer_endtoend_028
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, convert segmentation to 3D model for visualization, use the Paint tool to refine segmentation boundaries, add annotation label to highlight ROI region, toggle slice intersections and rotate 3D view for visualization, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_028",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, convert segmentation to 3D model for visualization, use the Paint tool to refine segmentation boundaries, add annotation label to highlight ROI region, toggle slice intersections and rotate 3D view for visualization, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 8,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 12,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 14,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_28_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
29
|
3dslicer_endtoend_029
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, threshold ventricles in the segmentation editor, convert segmentation to 3D model for visualization, compute ROI statistics for mean and standard deviation, display segmented model surface and adjust lighting, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_46_SaveScene_Dialog.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_029",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, threshold ventricles in the segmentation editor, convert segmentation to 3D model for visualization, compute ROI statistics for mean and standard deviation, display segmented model surface and adjust lighting, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 6,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 9,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 18,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 19,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 19: Creating visual annotations or measurements"
},
{
"step": 20,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 20: Creating visual annotations or measurements"
},
{
"step": 21,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 21: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_29_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 21
| 21
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
30
|
3dslicer_endtoend_030
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, place two fiducial points (AC and PC) and compute the distance, display segmented model surface and adjust lighting, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_030",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, place two fiducial points (AC and PC) and compute the distance, display segmented model surface and adjust lighting, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 6,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 8,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 12,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 16,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_30_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
31
|
3dslicer_endtoend_031
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, convert segmentation to 3D model for visualization, create a rectangular ROI to isolate temporal lobe structures, enable 3D rendering and set Brain preset opacity to 0.3, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png
|
{
"id": "3dslicer_endtoend_031",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, convert segmentation to 3D model for visualization, create a rectangular ROI to isolate temporal lobe structures, enable 3D rendering and set Brain preset opacity to 0.3, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 6: Changing magnification level"
},
{
"step": 7,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 7: Navigating through content"
},
{
"step": 8,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 9,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 11,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 14: Inputting or editing text content"
},
{
"step": 15,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 15: Inputting or editing text content"
},
{
"step": 16,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 17: Creating visual annotations or measurements"
},
{
"step": 18,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 18: Creating visual annotations or measurements"
},
{
"step": 19,
"action": "COMPLETE",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 19: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_31_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 19
| 19
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
32
|
3dslicer_endtoend_032
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, normalize intensity levels across slices, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, create a rectangular ROI to isolate temporal lobe structures, overlay segmentation model on the volume rendering, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_032",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, normalize intensity levels across slices, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, create a rectangular ROI to isolate temporal lobe structures, overlay segmentation model on the volume rendering, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 12,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 17: Creating visual annotations or measurements"
},
{
"step": 18,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 19,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 19: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_32_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 19
| 19
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
33
|
3dslicer_endtoend_033
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, compute ROI statistics for mean and standard deviation, enable 3D rendering and set Brain preset opacity to 0.3, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_42_ScreenCapture_Module.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_033",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, compute ROI statistics for mean and standard deviation, enable 3D rendering and set Brain preset opacity to 0.3, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 18,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 19,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 19: Creating visual annotations or measurements"
},
{
"step": 20,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 20: Creating visual annotations or measurements"
},
{
"step": 21,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 21: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 22,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 22: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_33_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 22
| 22
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
34
|
3dslicer_endtoend_034
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, compute ROI statistics for mean and standard deviation, toggle slice intersections and rotate 3D view for visualization, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_034",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, compute ROI statistics for mean and standard deviation, toggle slice intersections and rotate 3D view for visualization, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 9,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 16,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 17: Creating visual annotations or measurements"
},
{
"step": 18,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 18: Creating visual annotations or measurements"
},
{
"step": 19,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 19: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_34_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 19
| 19
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
35
|
3dslicer_endtoend_035
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, compute ROI statistics for mean and standard deviation, display segmented model surface and adjust lighting, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_035",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, compute ROI statistics for mean and standard deviation, display segmented model surface and adjust lighting, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 3: Changing magnification level"
},
{
"step": 4,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 4: Navigating through content"
},
{
"step": 5,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 17: Inputting or editing text content"
},
{
"step": 18,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_35_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
36
|
3dslicer_endtoend_036
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, normalize intensity levels across slices, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, draw a circular ROI over the left ventricle and measure intensity, display segmented model surface and adjust lighting, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png
|
{
"id": "3dslicer_endtoend_036",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, normalize intensity levels across slices, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, draw a circular ROI over the left ventricle and measure intensity, display segmented model surface and adjust lighting, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 12: Inputting or editing text content"
},
{
"step": 13,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 13: Inputting or editing text content"
},
{
"step": 14,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 18,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 19,
"action": "COMPLETE",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 19: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_36_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 19
| 19
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
37
|
3dslicer_endtoend_037
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, create a new segmentation for white and gray matter regions, compute ROI statistics for mean and standard deviation, enable 3D rendering and set Brain preset opacity to 0.3, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_46_SaveScene_Dialog.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_037",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, create a new segmentation for white and gray matter regions, compute ROI statistics for mean and standard deviation, enable 3D rendering and set Brain preset opacity to 0.3, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 18,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_37_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
38
|
3dslicer_endtoend_038
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, compute ROI statistics for mean and standard deviation, display segmented model surface and adjust lighting, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_42_ScreenCapture_Module.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_038",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, compute ROI statistics for mean and standard deviation, display segmented model surface and adjust lighting, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 17: Creating visual annotations or measurements"
},
{
"step": 18,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 18: Creating visual annotations or measurements"
},
{
"step": 19,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 19: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_38_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 19
| 19
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
39
|
3dslicer_endtoend_039
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, threshold ventricles in the segmentation editor, create a rectangular ROI to isolate temporal lobe structures, switch to Four-up layout and capture slice intersections, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_37_Layout_FourUp_View.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png
|
{
"id": "3dslicer_endtoend_039",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, threshold ventricles in the segmentation editor, create a rectangular ROI to isolate temporal lobe structures, switch to Four-up layout and capture slice intersections, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 5: Creating visual annotations or measurements"
},
{
"step": 6,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 9: Inputting or editing text content"
},
{
"step": 10,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 10: Inputting or editing text content"
},
{
"step": 11,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "COMPLETE",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_39_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
40
|
3dslicer_endtoend_040
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, normalize intensity levels across slices, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, create a rectangular ROI to isolate temporal lobe structures, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_46_SaveScene_Dialog.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_040",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, normalize intensity levels across slices, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, create a rectangular ROI to isolate temporal lobe structures, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 14,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 14: Creating visual annotations or measurements"
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_40_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
41
|
3dslicer_endtoend_041
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, place two fiducial points (AC and PC) and compute the distance, enable 3D rendering and set Brain preset opacity to 0.3, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_041",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, place two fiducial points (AC and PC) and compute the distance, enable 3D rendering and set Brain preset opacity to 0.3, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 10,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 12,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 12: Creating visual annotations or measurements"
},
{
"step": 13,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 13: Creating visual annotations or measurements"
},
{
"step": 14,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 18,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 19,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 19: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_41_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 19
| 19
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
42
|
3dslicer_endtoend_042
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, apply smoothing to the segmentation mask, threshold ventricles in the segmentation editor, draw a circular ROI over the left ventricle and measure intensity, display segmented model surface and adjust lighting, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png
|
{
"id": "3dslicer_endtoend_042",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, apply smoothing to the segmentation mask, threshold ventricles in the segmentation editor, draw a circular ROI over the left ventricle and measure intensity, display segmented model surface and adjust lighting, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 11: Inputting or editing text content"
},
{
"step": 12,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 12: Inputting or editing text content"
},
{
"step": 13,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 18,
"action": "COMPLETE",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_42_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
43
|
3dslicer_endtoend_043
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_043",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 18,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 19,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 19: Inputting or editing text content"
},
{
"step": 20,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 20: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_43_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 20
| 20
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
44
|
3dslicer_endtoend_044
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, threshold ventricles in the segmentation editor, compute ROI statistics for mean and standard deviation, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_46_SaveScene_Dialog.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_044",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, threshold ventricles in the segmentation editor, compute ROI statistics for mean and standard deviation, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 9,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 18,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_44_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
45
|
3dslicer_endtoend_045
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_42_ScreenCapture_Module.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_045",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 16,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_45_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
46
|
3dslicer_endtoend_046
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, toggle slice intersections and rotate 3D view for visualization, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png
|
{
"id": "3dslicer_endtoend_046",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, toggle slice intersections and rotate 3D view for visualization, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 7,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 12: Inputting or editing text content"
},
{
"step": 13,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 13: Inputting or editing text content"
},
{
"step": 14,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 16,
"action": "COMPLETE",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_46_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
47
|
3dslicer_endtoend_047
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, normalize intensity levels across slices, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, add annotation label to highlight ROI region, toggle slice intersections and rotate 3D view for visualization, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_047",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, normalize intensity levels across slices, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, add annotation label to highlight ROI region, toggle slice intersections and rotate 3D view for visualization, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 8,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 14,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 14: Creating visual annotations or measurements"
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 16: Inputting or editing text content"
},
{
"step": 17,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_47_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
48
|
3dslicer_endtoend_048
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, create a rectangular ROI to isolate temporal lobe structures, switch to Four-up layout and capture slice intersections, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_46_SaveScene_Dialog.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_048",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, create a rectangular ROI to isolate temporal lobe structures, switch to Four-up layout and capture slice intersections, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 12: Creating visual annotations or measurements"
},
{
"step": 13,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 13: Creating visual annotations or measurements"
},
{
"step": 14,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 14: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_48_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 14
| 14
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
49
|
3dslicer_endtoend_049
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, create a rectangular ROI to isolate temporal lobe structures, display segmented model surface and adjust lighting, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_049",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, create a rectangular ROI to isolate temporal lobe structures, display segmented model surface and adjust lighting, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 12,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_49_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
50
|
3dslicer_endtoend_050
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, normalize intensity levels across slices, convert segmentation to 3D model for visualization, threshold ventricles in the segmentation editor, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_37_Layout_FourUp_View.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_050",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, normalize intensity levels across slices, convert segmentation to 3D model for visualization, threshold ventricles in the segmentation editor, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 10,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 12,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 12: Creating visual annotations or measurements"
},
{
"step": 13,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 13: Creating visual annotations or measurements"
},
{
"step": 14,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 17,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 18,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 19,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 19: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 20,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 20: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_50_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 20
| 20
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
51
|
3dslicer_endtoend_051
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, compute ROI statistics for mean and standard deviation, enable 3D rendering and set Brain preset opacity to 0.3, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_051",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, compute ROI statistics for mean and standard deviation, enable 3D rendering and set Brain preset opacity to 0.3, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 17: Inputting or editing text content"
},
{
"step": 18,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_51_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
52
|
3dslicer_endtoend_052
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, add annotation label to highlight ROI region, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_46_SaveScene_Dialog.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_052",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, add annotation label to highlight ROI region, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 14,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 18,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_52_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
53
|
3dslicer_endtoend_053
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, create a new segmentation for white and gray matter regions, threshold ventricles in the segmentation editor, create a rectangular ROI to isolate temporal lobe structures, enable 3D rendering and set Brain preset opacity to 0.3, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_42_ScreenCapture_Module.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_053",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, apply Gaussian smoothing to denoise the volume, create a new segmentation for white and gray matter regions, threshold ventricles in the segmentation editor, create a rectangular ROI to isolate temporal lobe structures, enable 3D rendering and set Brain preset opacity to 0.3, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 10,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 18,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_53_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
54
|
3dslicer_endtoend_054
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, toggle slice intersections and rotate 3D view for visualization, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_46_SaveScene_Dialog.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_054",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, toggle slice intersections and rotate 3D view for visualization, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 11,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 12: Creating visual annotations or measurements"
},
{
"step": 13,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 15: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_54_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 15
| 15
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
55
|
3dslicer_endtoend_055
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, draw a circular ROI over the left ventricle and measure intensity, switch to Four-up layout and capture slice intersections, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_37_Layout_FourUp_View.png → BMRI_46_SaveScene_Dialog.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_055",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, draw a circular ROI over the left ventricle and measure intensity, switch to Four-up layout and capture slice intersections, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 14: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_55_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 14
| 14
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
56
|
3dslicer_endtoend_056
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, draw a circular ROI over the left ventricle and measure intensity, enable 3D rendering and set Brain preset opacity to 0.3, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_13_3D_Rendered_Opacity30_Y30.png
|
{
"id": "3dslicer_endtoend_056",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, draw a circular ROI over the left ventricle and measure intensity, enable 3D rendering and set Brain preset opacity to 0.3, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 13: Inputting or editing text content"
},
{
"step": 14,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 14: Inputting or editing text content"
},
{
"step": 15,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "COMPLETE",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_56_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
57
|
3dslicer_endtoend_057
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, normalize intensity levels across slices, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, add annotation label to highlight ROI region, display segmented model surface and adjust lighting, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png
|
{
"id": "3dslicer_endtoend_057",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, normalize intensity levels across slices, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, add annotation label to highlight ROI region, display segmented model surface and adjust lighting, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 6: Inputting or editing text content"
},
{
"step": 7,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 7: Inputting or editing text content"
},
{
"step": 8,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 14,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 14: Creating visual annotations or measurements"
},
{
"step": 15,
"action": "COMPLETE",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 15: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_57_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 15
| 15
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
58
|
3dslicer_endtoend_058
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, normalize intensity levels across slices, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, add annotation label to highlight ROI region, enable 3D rendering and set Brain preset opacity to 0.3, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_42_ScreenCapture_Module.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_058",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, normalize intensity levels across slices, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, add annotation label to highlight ROI region, enable 3D rendering and set Brain preset opacity to 0.3, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 18,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_58_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
59
|
3dslicer_endtoend_059
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, apply histogram equalization for better contrast, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, add annotation label to highlight ROI region, toggle slice intersections and rotate 3D view for visualization, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png
|
{
"id": "3dslicer_endtoend_059",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, apply histogram equalization for better contrast, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, add annotation label to highlight ROI region, toggle slice intersections and rotate 3D view for visualization, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 4,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 5: Creating visual annotations or measurements"
},
{
"step": 6,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 8: Inputting or editing text content"
},
{
"step": 9,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 9: Inputting or editing text content"
},
{
"step": 10,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 13,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 13: Creating visual annotations or measurements"
},
{
"step": 14,
"action": "COMPLETE",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 14: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_59_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 14
| 14
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
60
|
3dslicer_endtoend_060
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, use the Paint tool to refine segmentation boundaries, place two fiducial points (AC and PC) and compute the distance, overlay segmentation model on the volume rendering, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_42_ScreenCapture_Module.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_060",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, use the Paint tool to refine segmentation boundaries, place two fiducial points (AC and PC) and compute the distance, overlay segmentation model on the volume rendering, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 16,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_60_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
61
|
3dslicer_endtoend_061
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, enable 3D rendering and set Brain preset opacity to 0.3, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_46_SaveScene_Dialog.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_061",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, enable 3D rendering and set Brain preset opacity to 0.3, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 7,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 17,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 18,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_61_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
62
|
3dslicer_endtoend_062
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, add annotation label to highlight ROI region, overlay segmentation model on the volume rendering, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_12_Select_Volume_Rendering_Tool.png
|
{
"id": "3dslicer_endtoend_062",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, invert grayscale to highlight low-intensity structures, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, add annotation label to highlight ROI region, overlay segmentation model on the volume rendering, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 10: Inputting or editing text content"
},
{
"step": 11,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 11: Inputting or editing text content"
},
{
"step": 12,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "COMPLETE",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_62_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
63
|
3dslicer_endtoend_063
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, create a rectangular ROI to isolate temporal lobe structures, enable 3D rendering and set Brain preset opacity to 0.3, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_46_SaveScene_Dialog.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_063",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, apply smoothing to the segmentation mask, create a rectangular ROI to isolate temporal lobe structures, enable 3D rendering and set Brain preset opacity to 0.3, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 12,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 12: Creating visual annotations or measurements"
},
{
"step": 13,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 13: Creating visual annotations or measurements"
},
{
"step": 14,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 15: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_63_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 15
| 15
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
64
|
3dslicer_endtoend_064
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, create a rectangular ROI to isolate temporal lobe structures, toggle slice intersections and rotate 3D view for visualization, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_064",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, convert segmentation to 3D model for visualization, apply smoothing to the segmentation mask, create a rectangular ROI to isolate temporal lobe structures, toggle slice intersections and rotate 3D view for visualization, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 8,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 12,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 14,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 14: Creating visual annotations or measurements"
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_64_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
65
|
3dslicer_endtoend_065
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, place two fiducial points (AC and PC) and compute the distance, toggle slice intersections and rotate 3D view for visualization, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_46_SaveScene_Dialog.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_065",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, place two fiducial points (AC and PC) and compute the distance, toggle slice intersections and rotate 3D view for visualization, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 13: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_65_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 13
| 13
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
66
|
3dslicer_endtoend_066
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, normalize intensity levels across slices, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, place two fiducial points (AC and PC) and compute the distance, enable 3D rendering and set Brain preset opacity to 0.3, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_13_3D_Rendered_Opacity30_Y30.png
|
{
"id": "3dslicer_endtoend_066",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, normalize intensity levels across slices, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, place two fiducial points (AC and PC) and compute the distance, enable 3D rendering and set Brain preset opacity to 0.3, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 8,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 14: Inputting or editing text content"
},
{
"step": 15,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 15: Inputting or editing text content"
},
{
"step": 16,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 18,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 19,
"action": "COMPLETE",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 19: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_66_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 19
| 19
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
67
|
3dslicer_endtoend_067
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, use the Paint tool to refine segmentation boundaries, draw a circular ROI over the left ventricle and measure intensity, toggle slice intersections and rotate 3D view for visualization, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png
|
{
"id": "3dslicer_endtoend_067",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, normalize intensity levels across slices, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, use the Paint tool to refine segmentation boundaries, draw a circular ROI over the left ventricle and measure intensity, toggle slice intersections and rotate 3D view for visualization, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 7,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 9,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 13: Inputting or editing text content"
},
{
"step": 14,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 14: Inputting or editing text content"
},
{
"step": 15,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 17,
"action": "COMPLETE",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_67_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
68
|
3dslicer_endtoend_068
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, draw a circular ROI over the left ventricle and measure intensity, display segmented model surface and adjust lighting, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_46_SaveScene_Dialog.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_068",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, convert segmentation to 3D model for visualization, draw a circular ROI over the left ventricle and measure intensity, display segmented model surface and adjust lighting, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 4: Changing magnification level"
},
{
"step": 5,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 5: Navigating through content"
},
{
"step": 6,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 7,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 16,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_68_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
69
|
3dslicer_endtoend_069
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, threshold ventricles in the segmentation editor, add annotation label to highlight ROI region, enable 3D rendering and set Brain preset opacity to 0.3, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_46_SaveScene_Dialog.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_069",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, threshold ventricles in the segmentation editor, add annotation label to highlight ROI region, enable 3D rendering and set Brain preset opacity to 0.3, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 18,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_69_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
70
|
3dslicer_endtoend_070
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, compute ROI statistics for mean and standard deviation, enable 3D rendering and set Brain preset opacity to 0.3, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_46_SaveScene_Dialog.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_070",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, threshold ventricles in the segmentation editor, compute ROI statistics for mean and standard deviation, enable 3D rendering and set Brain preset opacity to 0.3, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 18,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 19,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 19: Creating visual annotations or measurements"
},
{
"step": 20,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 20: Creating visual annotations or measurements"
},
{
"step": 21,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 21: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 22,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 22: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_70_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 22
| 22
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
71
|
3dslicer_endtoend_071
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, toggle slice intersections and rotate 3D view for visualization, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png
|
{
"id": "3dslicer_endtoend_071",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, toggle slice intersections and rotate 3D view for visualization, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 5: Creating visual annotations or measurements"
},
{
"step": 6,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 12: Inputting or editing text content"
},
{
"step": 13,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 13: Inputting or editing text content"
},
{
"step": 14,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 16,
"action": "COMPLETE",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_71_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
72
|
3dslicer_endtoend_072
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, place two fiducial points (AC and PC) and compute the distance, enable 3D rendering and set Brain preset opacity to 0.3, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_072",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, place two fiducial points (AC and PC) and compute the distance, enable 3D rendering and set Brain preset opacity to 0.3, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 15,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_72_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
73
|
3dslicer_endtoend_073
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_37_Layout_FourUp_View.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_073",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 4: Changing magnification level"
},
{
"step": 5,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 5: Navigating through content"
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 8,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 18,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 18: Inputting or editing text content"
},
{
"step": 19,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 19: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_73_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 19
| 19
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
74
|
3dslicer_endtoend_074
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, draw a circular ROI over the left ventricle and measure intensity, display segmented model surface and adjust lighting, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_46_SaveScene_Dialog.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_074",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, draw a circular ROI over the left ventricle and measure intensity, display segmented model surface and adjust lighting, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 4,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 4: Creating visual annotations or measurements"
},
{
"step": 5,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 5: Creating visual annotations or measurements"
},
{
"step": 6,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 15,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_74_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
75
|
3dslicer_endtoend_075
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, use the Paint tool to refine segmentation boundaries, place two fiducial points (AC and PC) and compute the distance, overlay segmentation model on the volume rendering, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_42_ScreenCapture_Module.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_075",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply histogram equalization for better contrast, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, use the Paint tool to refine segmentation boundaries, place two fiducial points (AC and PC) and compute the distance, overlay segmentation model on the volume rendering, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 16,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_75_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
76
|
3dslicer_endtoend_076
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, create a rectangular ROI to isolate temporal lobe structures, switch to Four-up layout and capture slice intersections, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_076",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, create a rectangular ROI to isolate temporal lobe structures, switch to Four-up layout and capture slice intersections, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 4,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 4: Changing magnification level"
},
{
"step": 5,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 5: Navigating through content"
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 8,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 14,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 14: Creating visual annotations or measurements"
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 16: Inputting or editing text content"
},
{
"step": 17,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_76_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
77
|
3dslicer_endtoend_077
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_077",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 8,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 17,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 18,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 18: Inputting or editing text content"
},
{
"step": 19,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 19: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_77_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 19
| 19
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
78
|
3dslicer_endtoend_078
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, add annotation label to highlight ROI region, toggle slice intersections and rotate 3D view for visualization, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_42_ScreenCapture_Module.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_078",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, run bias correction to remove shading artifacts, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, threshold ventricles in the segmentation editor, add annotation label to highlight ROI region, toggle slice intersections and rotate 3D view for visualization, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 12,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 13: Creating visual annotations or measurements"
},
{
"step": 14,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 14: Creating visual annotations or measurements"
},
{
"step": 15,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 15: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_78_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 15
| 15
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
79
|
3dslicer_endtoend_079
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, threshold ventricles in the segmentation editor, convert segmentation to 3D model for visualization, draw a circular ROI over the left ventricle and measure intensity, enable 3D rendering and set Brain preset opacity to 0.3, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_42_ScreenCapture_Module.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_079",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, run bias correction to remove shading artifacts, invert grayscale to highlight low-intensity structures, threshold ventricles in the segmentation editor, convert segmentation to 3D model for visualization, draw a circular ROI over the left ventricle and measure intensity, enable 3D rendering and set Brain preset opacity to 0.3, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 6: Changing magnification level"
},
{
"step": 7,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 7: Navigating through content"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 11,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 12: Creating visual annotations or measurements"
},
{
"step": 13,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 13: Creating visual annotations or measurements"
},
{
"step": 14,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 18,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 19,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 19: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 20,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 20: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_79_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 20
| 20
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
80
|
3dslicer_endtoend_080
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, convert segmentation to 3D model for visualization, create a rectangular ROI to isolate temporal lobe structures, switch to Four-up layout and capture slice intersections, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png
|
{
"id": "3dslicer_endtoend_080",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, threshold ventricles in the segmentation editor, convert segmentation to 3D model for visualization, create a rectangular ROI to isolate temporal lobe structures, switch to Four-up layout and capture slice intersections, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 9,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 10: Inputting or editing text content"
},
{
"step": 11,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 11: Inputting or editing text content"
},
{
"step": 12,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 16,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 17: Creating visual annotations or measurements"
},
{
"step": 18,
"action": "COMPLETE",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_80_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
81
|
3dslicer_endtoend_081
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, convert segmentation to 3D model for visualization, add annotation label to highlight ROI region, toggle slice intersections and rotate 3D view for visualization, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_46_SaveScene_Dialog.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_081",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, convert segmentation to 3D model for visualization, add annotation label to highlight ROI region, toggle slice intersections and rotate 3D view for visualization, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 6,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 9,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 14: Creating visual annotations or measurements"
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_81_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
82
|
3dslicer_endtoend_082
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, compute ROI statistics for mean and standard deviation, switch to Four-up layout and capture slice intersections, export the segmentation labelmap and save the MRML scene.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_37_Layout_FourUp_View.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_06_Export_Labelmap_DataModule.png → BMRI_46_SaveScene_Dialog.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png
|
{
"id": "3dslicer_endtoend_082",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, compute ROI statistics for mean and standard deviation, switch to Four-up layout and capture slice intersections, export the segmentation labelmap and save the MRML scene.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 7,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 12: Inputting or editing text content"
},
{
"step": 13,
"action": "TEXT",
"target": "Data Module",
"screenshot": "BMRI_06_Export_Labelmap_DataModule.png",
"note": "Step 13: Inputting or editing text content"
},
{
"step": 14,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 18,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 19,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 19: Creating visual annotations or measurements"
},
{
"step": 20,
"action": "COMPLETE",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 20: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_82_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 20
| 20
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_06_Export_Labelmap_DataModule.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
83
|
3dslicer_endtoend_083
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, toggle slice intersections and rotate 3D view for visualization, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_46_SaveScene_Dialog.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_083",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, normalize intensity levels across slices, create a new segmentation for white and gray matter regions, apply smoothing to the segmentation mask, place two fiducial points (AC and PC) and compute the distance, toggle slice intersections and rotate 3D view for visualization, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 11,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 12: Creating visual annotations or measurements"
},
{
"step": 13,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_83_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
84
|
3dslicer_endtoend_084
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, create a new segmentation for white and gray matter regions, draw a circular ROI over the left ventricle and measure intensity, display segmented model surface and adjust lighting, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_084",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, convert segmentation to 3D model for visualization, create a new segmentation for white and gray matter regions, draw a circular ROI over the left ventricle and measure intensity, display segmented model surface and adjust lighting, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 9,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 14,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 16: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_84_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 16
| 16
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
85
|
3dslicer_endtoend_085
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, create a rectangular ROI to isolate temporal lobe structures, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_46_SaveScene_Dialog.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_085",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply histogram equalization for better contrast, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, create a rectangular ROI to isolate temporal lobe structures, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 5,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 12: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_85_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 12
| 12
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
86
|
3dslicer_endtoend_086
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, create a new segmentation for white and gray matter regions, create a rectangular ROI to isolate temporal lobe structures, toggle slice intersections and rotate 3D view for visualization, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_42_ScreenCapture_Module.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_086",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, invert grayscale to highlight low-intensity structures, convert segmentation to 3D model for visualization, create a new segmentation for white and gray matter regions, create a rectangular ROI to isolate temporal lobe structures, toggle slice intersections and rotate 3D view for visualization, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 10,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 13,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 13: Creating visual annotations or measurements"
},
{
"step": 14,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 14: Creating visual annotations or measurements"
},
{
"step": 15,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 15: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_86_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 15
| 15
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
87
|
3dslicer_endtoend_087
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, draw a circular ROI over the left ventricle and measure intensity, switch to Four-up layout and capture slice intersections, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_37_Layout_FourUp_View.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_087",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, normalize intensity levels across slices, apply histogram equalization for better contrast, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, draw a circular ROI over the left ventricle and measure intensity, switch to Four-up layout and capture slice intersections, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 8,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 17,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 17: Inputting or editing text content"
},
{
"step": 18,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_87_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
88
|
3dslicer_endtoend_088
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, normalize intensity levels across slices, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, compute ROI statistics for mean and standard deviation, display segmented model surface and adjust lighting, capture screen layout and save composite visualization.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_42_ScreenCapture_Module.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_088",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, normalize intensity levels across slices, threshold ventricles in the segmentation editor, use the Paint tool to refine segmentation boundaries, compute ROI statistics for mean and standard deviation, display segmented model surface and adjust lighting, capture screen layout and save composite visualization.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 18,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 19,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 19: Creating visual annotations or measurements"
},
{
"step": 20,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 20: Creating visual annotations or measurements"
},
{
"step": 21,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 21: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_88_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 21
| 21
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
89
|
3dslicer_endtoend_089
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_46_SaveScene_Dialog.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_089",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, apply Gaussian smoothing to denoise the volume, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 4,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 4: Creating visual annotations or measurements"
},
{
"step": 5,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 5: Creating visual annotations or measurements"
},
{
"step": 6,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 15: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_89_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 15
| 15
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
90
|
3dslicer_endtoend_090
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, threshold ventricles in the segmentation editor, convert segmentation to 3D model for visualization, add annotation label to highlight ROI region, enable 3D rendering and set Brain preset opacity to 0.3, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_090",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, threshold ventricles in the segmentation editor, convert segmentation to 3D model for visualization, add annotation label to highlight ROI region, enable 3D rendering and set Brain preset opacity to 0.3, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 9,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 14,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 16,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 17: Creating visual annotations or measurements"
},
{
"step": 18,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 18: Creating visual annotations or measurements"
},
{
"step": 19,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 19: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 20,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 20: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_90_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 20
| 20
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
91
|
3dslicer_endtoend_091
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, convert segmentation to 3D model for visualization, add annotation label to highlight ROI region, switch to Four-up layout and capture slice intersections, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_37_Layout_FourUp_View.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_091",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, convert segmentation to 3D model for visualization, add annotation label to highlight ROI region, switch to Four-up layout and capture slice intersections, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 10,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 17: Creating visual annotations or measurements"
},
{
"step": 18,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 18: Inputting or editing text content"
},
{
"step": 19,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 19: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_91_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 19
| 19
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
92
|
3dslicer_endtoend_092
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, threshold ventricles in the segmentation editor, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_092",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, apply histogram equalization for better contrast, create a new segmentation for white and gray matter regions, threshold ventricles in the segmentation editor, draw a circular ROI over the left ventricle and measure intensity, overlay segmentation model on the volume rendering, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 5: Creating visual annotations or measurements"
},
{
"step": 6,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 6: Creating visual annotations or measurements"
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 17: Inputting or editing text content"
},
{
"step": 18,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_92_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
93
|
3dslicer_endtoend_093
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, compute ROI statistics for mean and standard deviation, switch to Four-up layout and capture slice intersections, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_37_Layout_FourUp_View.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_093",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, compute ROI statistics for mean and standard deviation, switch to Four-up layout and capture slice intersections, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 17,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 17: Creating visual annotations or measurements"
},
{
"step": 18,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 18: Creating visual annotations or measurements"
},
{
"step": 19,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 19: Inputting or editing text content"
},
{
"step": 20,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 20: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_93_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 20
| 20
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
94
|
3dslicer_endtoend_094
|
Open MRI project for Akash, set layout to 1×2, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_02_Slice_Sync_MPR_View.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_37_Layout_FourUp_View.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_094",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Open MRI project for Akash, set layout to 1\u00d72, and ensure axial and sagittal slices are visible, invert grayscale to highlight low-intensity structures, invert grayscale to highlight low-intensity structures, use the Paint tool to refine segmentation boundaries, convert segmentation to 3D model for visualization, place two fiducial points (AC and PC) and compute the distance, switch to Four-up layout and capture slice intersections, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 3,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_02_Slice_Sync_MPR_View.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1051,
0,
1086,
35
]
},
{
"step": 4,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 4: Changing magnification level"
},
{
"step": 5,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 5: Navigating through content"
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 8,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 11: Creating visual annotations or measurements"
},
{
"step": 12,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 18,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 18: Inputting or editing text content"
},
{
"step": 19,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 19: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_94_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 19
| 19
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_02_Slice_Sync_MPR_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
95
|
3dslicer_endtoend_095
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, place two fiducial points (AC and PC) and compute the distance, display segmented model surface and adjust lighting, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_23_Segmentation_To_Model_Conversion.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_095",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, apply Gaussian smoothing to denoise the volume, apply smoothing to the segmentation mask, convert segmentation to 3D model for visualization, place two fiducial points (AC and PC) and compute the distance, display segmented model surface and adjust lighting, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 5,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_23_Segmentation_To_Model_Conversion.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1629,
795,
1920,
826
]
},
{
"step": 7,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 13,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 16,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 17,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_95_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_23_Segmentation_To_Model_Conversion.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
96
|
3dslicer_endtoend_096
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, place two fiducial points (AC and PC) and compute the distance, display segmented model surface and adjust lighting, export STL model and capture final 3D screenshot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_29_Apply_GrayscaleInverse_Colormap.png → BMRI_29_Scroll_To_Inverted_Gray.png → BMRI_04_Threshold_Ventricles_Segmentation.png → BMRI_05_Segmentation_Overlay_Axial.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_26_Select_Fiducial.png → BMRI_26_Fiducials_ACPC_Placed.png → BMRI_27_Fiducials_Distance_Measured.png → BMRI_25_Select_File_Tool.png → BMRI_25_Export_STL_Confirmation.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_096",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, invert grayscale to highlight low-intensity structures, apply histogram equalization for better contrast, threshold ventricles in the segmentation editor, create a new segmentation for white and gray matter regions, place two fiducial points (AC and PC) and compute the distance, display segmented model surface and adjust lighting, export STL model and capture final 3D screenshot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 5,
"action": "ZOOM",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Apply_GrayscaleInverse_Colormap.png",
"note": "Step 5: Changing magnification level"
},
{
"step": 6,
"action": "SCROLL",
"target": "Invert Grayscale",
"screenshot": "BMRI_29_Scroll_To_Inverted_Gray.png",
"note": "Step 6: Navigating through content"
},
{
"step": 7,
"action": "SEGMENT",
"target": "Threshold Tool",
"screenshot": "BMRI_04_Threshold_Ventricles_Segmentation.png",
"note": "Step 7: Creating visual annotations or measurements"
},
{
"step": 8,
"action": "SEGMENT",
"target": "Segmentation Module",
"screenshot": "BMRI_05_Segmentation_Overlay_Axial.png",
"note": "Step 8: Creating visual annotations or measurements"
},
{
"step": 9,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 10,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "26 Select Fiducial",
"screenshot": "BMRI_26_Select_Fiducial.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
0,
283,
136,
319
]
},
{
"step": 12,
"action": "SEGMENT",
"target": "26 Fiducials Acpc Placed",
"screenshot": "BMRI_26_Fiducials_ACPC_Placed.png",
"note": "Step 12: Creating visual annotations or measurements"
},
{
"step": 13,
"action": "SEGMENT",
"target": "Measurement Tool",
"screenshot": "BMRI_27_Fiducials_Distance_Measured.png",
"note": "Step 13: Creating visual annotations or measurements"
},
{
"step": 14,
"action": "CLICK",
"target": "25 Select File Tool",
"screenshot": "BMRI_25_Select_File_Tool.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "CLICK",
"target": "Export STL",
"screenshot": "BMRI_25_Export_STL_Confirmation.png",
"note": "Step 15: Interacting with UI elements",
"bbox": [
4,
187,
294,
218
]
},
{
"step": 16,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 16: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 17,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 18,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 18: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 19,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 19: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_96_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 19
| 19
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Apply_GrayscaleInverse_Colormap.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_29_Scroll_To_Inverted_Gray.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Threshold_Ventricles_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_05_Segmentation_Overlay_Axial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Select_Fiducial.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_26_Fiducials_ACPC_Placed.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_27_Fiducials_Distance_Measured.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Select_File_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_25_Export_STL_Confirmation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
97
|
3dslicer_endtoend_097
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, draw a circular ROI over the left ventricle and measure intensity, toggle slice intersections and rotate 3D view for visualization, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_38_MPR_Slice_Intersections_On.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_097",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, run bias correction to remove shading artifacts, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, draw a circular ROI over the left ventricle and measure intensity, toggle slice intersections and rotate 3D view for visualization, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 9: Creating visual annotations or measurements"
},
{
"step": 10,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "MPR Slice Sync",
"screenshot": "BMRI_38_MPR_Slice_Intersections_On.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 14,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 14: Inputting or editing text content"
},
{
"step": 15,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 15: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_97_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 15
| 15
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_38_MPR_Slice_Intersections_On.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
98
|
3dslicer_endtoend_098
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, compute ROI statistics for mean and standard deviation, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_28_Intensity_Normalized_0to1.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_20_Select_Apply.png → BMRI_20_ROI_Statistics_Table.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_46_SaveScene_Dialog.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_098",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, normalize intensity levels across slices, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, use the Paint tool to refine segmentation boundaries, compute ROI statistics for mean and standard deviation, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "28 Intensity Normalized 0To1",
"screenshot": "BMRI_28_Intensity_Normalized_0to1.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1468,
673,
1920,
704
]
},
{
"step": 6,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 7,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "20 Select Apply",
"screenshot": "BMRI_20_Select_Apply.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "SEGMENT",
"target": "ROI Tool",
"screenshot": "BMRI_20_ROI_Statistics_Table.png",
"note": "Step 10: Creating visual annotations or measurements"
},
{
"step": 11,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 14,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 16: Creating visual annotations or measurements"
},
{
"step": 17,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 17: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 18,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 18: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_98_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 18
| 18
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_28_Intensity_Normalized_0to1.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_Select_Apply.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_20_ROI_Statistics_Table.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
99
|
3dslicer_endtoend_099
|
Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, add annotation label to highlight ROI region, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.
|
Import_Akash_Data.png → BMRI_16_Select_Data_Module.png → BMRI_01_Load_T1T2_Layout12.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_21_Intensity_Histogram_Plot.png → BMRI_04_Add_New_Segmentation.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_46_SaveScene_Dialog.png → BMRI_22_Change_Opacity_And_Slice.png → BMRI_12_VolumeRendering_Module_Open.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_12_Select_Volume_Rendering_Tool.png → BMRI_36_Export_Labelmap_Dialog.png
|
{
"id": "3dslicer_endtoend_099",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Import MRI volume of Akash, open the Data module, and confirm T1 and T2 scans are loaded, apply histogram equalization for better contrast, run bias correction to remove shading artifacts, create a new segmentation for white and gray matter regions, create a new segmentation for white and gray matter regions, add annotation label to highlight ROI region, overlay segmentation model on the volume rendering, save processed dataset and export intensity plot.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Data Module",
"screenshot": "BMRI_16_Select_Data_Module.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "1\u00d72 Layout",
"screenshot": "BMRI_01_Load_T1T2_Layout12.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1468,
672,
1920,
703
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Plot Module",
"screenshot": "BMRI_21_Intensity_Histogram_Plot.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 8,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "Slice Viewer",
"screenshot": "BMRI_22_Change_Opacity_And_Slice.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_VolumeRendering_Module_Open.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 12: Creating visual annotations or measurements"
},
{
"step": 13,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 13: Creating visual annotations or measurements"
},
{
"step": 14,
"action": "CLICK",
"target": "Volume Rendering Module",
"screenshot": "BMRI_12_Select_Volume_Rendering_Tool.png",
"note": "Step 14: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 15,
"action": "COMPLETE",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 15: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_99_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 15
| 15
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_16_Select_Data_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_01_Load_T1T2_Layout12.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_21_Intensity_Histogram_Plot.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_22_Change_Opacity_And_Slice.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_VolumeRendering_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_12_Select_Volume_Rendering_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
100
|
3dslicer_endtoend_100
|
Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, add annotation label to highlight ROI region, display segmented model surface and adjust lighting, save the rendered image as PNG and export segment statistics CSV.
|
Import_Akash_Data.png → BMRI_37_Layout_FourUp_View.png → BMRI_07_BiasCorrection_Module_Open.png → BMRI_08_BiasCorrection_Comparison_BeforeAfter.png → BMRI_09_Gaussian_Smoothing_Applied.png → BMRI_35_Segmentation_Smoothing_Apply_Tool.png → BMRI_35_Segmentation_Smoothing_Applied.png → BMRI_13_3D_Rendered_Opacity30_Y30.png → BMRI_42_ScreenCapture_Module.png → BMRI_24_Model_3DView_SurfaceVisible.png → BMRI_45_Models_Module_ToggleSurface.png → BMRI_04_Open_Segmentation_Editor.png → BMRI_04_Add_New_Segmentation.png → BMRI_19_Select_Circle_ROI_Tool.png → BMRI_19_ROI_LateralVentricle_CircleDraw.png → BMRI_36_Export_Labelmap_Dialog.png → BMRI_46_SaveScene_Dialog.png
|
{
"id": "3dslicer_endtoend_100",
"initial_state": {
"application": "3D Slicer",
"display_resolution": [
1920,
1080
],
"loaded_image": "Import_Akash_Data.png"
},
"instruction": "Load MRI brain series of Akash, import the dataset, and verify orientation in Four-up view, apply Gaussian smoothing to denoise the volume, run bias correction to remove shading artifacts, use the Paint tool to refine segmentation boundaries, apply smoothing to the segmentation mask, add annotation label to highlight ROI region, display segmented model surface and adjust lighting, save the rendered image as PNG and export segment statistics CSV.",
"trajectory": [
{
"step": 1,
"action": "CLICK",
"target": "Load Data (Akash)",
"screenshot": "Import_Akash_Data.png",
"note": "Step 1: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 2,
"action": "CLICK",
"target": "Four-Up Layout",
"screenshot": "BMRI_37_Layout_FourUp_View.png",
"note": "Step 2: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 3,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_07_BiasCorrection_Module_Open.png",
"note": "Step 3: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 4,
"action": "CLICK",
"target": "N4ITK Bias Correction",
"screenshot": "BMRI_08_BiasCorrection_Comparison_BeforeAfter.png",
"note": "Step 4: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 5,
"action": "CLICK",
"target": "09 Gaussian Smoothing Applied",
"screenshot": "BMRI_09_Gaussian_Smoothing_Applied.png",
"note": "Step 5: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 6,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Apply_Tool.png",
"note": "Step 6: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 7,
"action": "CLICK",
"target": "Smoothing Tool",
"screenshot": "BMRI_35_Segmentation_Smoothing_Applied.png",
"note": "Step 7: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 8,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_13_3D_Rendered_Opacity30_Y30.png",
"note": "Step 8: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 9,
"action": "CLICK",
"target": "Screen Capture Module",
"screenshot": "BMRI_42_ScreenCapture_Module.png",
"note": "Step 9: Interacting with UI elements",
"bbox": [
1054,
3,
1085,
35
]
},
{
"step": 10,
"action": "CLICK",
"target": "3D View Rotate",
"screenshot": "BMRI_24_Model_3DView_SurfaceVisible.png",
"note": "Step 10: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 11,
"action": "CLICK",
"target": "Models Module",
"screenshot": "BMRI_45_Models_Module_ToggleSurface.png",
"note": "Step 11: Interacting with UI elements",
"bbox": [
1054,
0,
1089,
35
]
},
{
"step": 12,
"action": "CLICK",
"target": "Segmentation Module",
"screenshot": "BMRI_04_Open_Segmentation_Editor.png",
"note": "Step 12: Interacting with UI elements",
"bbox": [
1052,
0,
1087,
35
]
},
{
"step": 13,
"action": "CLICK",
"target": "Add Segment",
"screenshot": "BMRI_04_Add_New_Segmentation.png",
"note": "Step 13: Interacting with UI elements",
"bbox": [
1051,
0,
1082,
32
]
},
{
"step": 14,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_Select_Circle_ROI_Tool.png",
"note": "Step 14: Creating visual annotations or measurements"
},
{
"step": 15,
"action": "SEGMENT",
"target": "Circle ROI",
"screenshot": "BMRI_19_ROI_LateralVentricle_CircleDraw.png",
"note": "Step 15: Creating visual annotations or measurements"
},
{
"step": 16,
"action": "TEXT",
"target": "Export Labelmap",
"screenshot": "BMRI_36_Export_Labelmap_Dialog.png",
"note": "Step 16: Inputting or editing text content"
},
{
"step": 17,
"action": "COMPLETE",
"target": "Save Scene",
"screenshot": "BMRI_46_SaveScene_Dialog.png",
"note": "Step 17: Finalizing or completing the entire task"
}
],
"outputs": {
"final_file": "task_100_output.png",
"verification": {
"steps_completed": true,
"annotation_exists": false
},
"success": true
}
}
| 17
| 17
|
/home/rishu/Projects/3D slicer/MRI Brain/Import_Akash_Data.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_37_Layout_FourUp_View.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_07_BiasCorrection_Module_Open.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_08_BiasCorrection_Comparison_BeforeAfter.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_09_Gaussian_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Apply_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_35_Segmentation_Smoothing_Applied.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_13_3D_Rendered_Opacity30_Y30.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_42_ScreenCapture_Module.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_24_Model_3DView_SurfaceVisible.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_45_Models_Module_ToggleSurface.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Open_Segmentation_Editor.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_04_Add_New_Segmentation.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_Select_Circle_ROI_Tool.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_19_ROI_LateralVentricle_CircleDraw.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_36_Export_Labelmap_Dialog.png|/home/rishu/Projects/3D slicer/MRI Brain/BMRI_46_SaveScene_Dialog.png
|
/home/rishu/Projects/3D slicer/MRI Brain
|
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