title: PHPStorm not seeing changes after renaming files
body: <p>In my PHPStorm project, I renamed some files using <code>Refactor &gt; Rename</code>. However, now when I make changes to the files PHPStorm does not immediately see the changes, and thus does not upload the newly modified files to my server. The project is tracked using a local git repository, and uploads automatically after a commit. </p>
  
  <p>If I open up the GitHub Windows application, I can see the modified files. What's interesting is after opening up the GitHub app, PHPStorm will tell me the files have been renamed, but the rename happened many commits ago!</p>
  
  <p>The modified files do show up dark blue on the project explorer, and the files in question are not in my <code>.gitignore</code>.</p>