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A subworkflow for fusion detection from RNA-seq data with arriba. The fusion calling is based on splice-aware, chimeric alignments done with STAR. STAR is used with specific parameters to ensure optimal functionality of the arriba fusion detection, for details, see the documentation.
This meta-wrapper can be used by integrating the following into your workflow:
Note that input, output and log file paths can be chosen freely, as long as the dependencies between the rules remain as listed here. For additional parameters in each individual wrapper, please refer to their corresponding documentation (see links below).
the software dependencies will be automatically deployed into an isolated environment before execution.
The following individual wrappers are used in this meta-wrapper:
Please refer to each wrapper in above list for additional configuration parameters and information about the executed code.