Al Qaeda helped Jemaah Islamiya (JI), a nascent organization headed by Indonesian Islamists with cells scattered across Malaysia, Singapore, Indonesia, and the Philippines.
( ( Al Qaeda ) ( ( helped ( ( ( ( Jemaah Islamiya ) ( -LRB- ( JI -RRB- ) ) ) , ) ( ( a ( nascent organization ) ) ( ( headed ( by ( Indonesian Islamists ) ) ) ( with ( cells ( scattered ( across ( ( ( Malaysia ( , ( Singapore ( , ( Indonesia , ) ) ) ) ) and ) ( the Philippines ) ) ) ) ) ) ) ) ) ) . ) )
(ROOT (S (NP (NNP Al) (NNP Qaeda)) (VP (VBD helped) (NP (NP (NP (NNP Jemaah) (NNP Islamiya)) (PRN (-LRB- -LRB-) (NP (NNP JI)) (-RRB- -RRB-))) (, ,) (NP (NP (DT a) (JJ nascent) (NN organization)) (VP (VBN headed) (PP (IN by) (NP (NNP Indonesian) (NNPS Islamists))) (PP (IN with) (NP (NP (NNS cells)) (VP (VBN scattered) (PP (IN across) (NP (NP (NNP Malaysia) (, ,) (NNP Singapore) (, ,) (NNP Indonesia) (, ,)) (CC and) (NP (DT the) (NNPS Philippines))))))))))) (. .)))
Al Qaeda had a hand in assisting Jemaah Islamiya.
( ( Al Qaeda ) ( ( had ( ( a hand ) ( in ( assisting ( Jemaah Islamiya ) ) ) ) ) . ) )
(ROOT (S (NP (NNP Al) (NNP Qaeda)) (VP (VBD had) (NP (NP (DT a) (NN hand)) (PP (IN in) (S (VP (VBG assisting) (NP (NNP Jemaah) (NNP Islamiya))))))) (. .)))