A muckraking cover story investigates how the Pentagon disposes of surplus weapons (the short  badly).
( ( A ( muckraking ( cover story ) ) ) ( ( investigates ( how ( ( the Pentagon ) ( ( disposes ( of ( surplus weapons ) ) ) ( -LRB- ( ( the ( short badly ) ) -RRB- ) ) ) ) ) ) . ) )
(ROOT (S (NP (DT A) (VBG muckraking) (NN cover) (NN story)) (VP (VBZ investigates) (SBAR (WHADVP (WRB how)) (S (NP (DT the) (NNP Pentagon)) (VP (VBZ disposes) (PP (IN of) (NP (NN surplus) (NNS weapons))) (PRN (-LRB- -LRB-) (NP (DT the) (ADJP (JJ short) (RB badly))) (-RRB- -RRB-)))))) (. .)))
An investigative journalism cover story, investigated how the Pentagon disposes of surplus weapons.
( ( An ( investigative journalism ) ) ( ( cover ( ( story , ) ( investigated ( how ( ( the Pentagon ) ( disposes ( of ( surplus weapons ) ) ) ) ) ) ) ) . ) )
(ROOT (S (NP (DT An) (JJ investigative) (NN journalism)) (VP (VBP cover) (NP (NP (NN story)) (, ,) (VP (VBN investigated) (SBAR (WHADVP (WRB how)) (S (NP (DT the) (NNP Pentagon)) (VP (VBZ disposes) (PP (IN of) (NP (NN surplus) (NNS weapons))))))))) (. .)))