	Baker Run (also known as Windfall Run) is a tributary of Bowman Creek in Wyoming County, Pennsylvania, in the United States. It is approximately long and flows through Noxen Township. The watershed of the stream has an area of . The stream is not designated as an impaired waterbody. The surficial geology in its vicinity consists of alluvium, alluvial terrace, and Wisconsinan Till. Its watershed is designated as a High-Quality Coldwater Fishery and a Migratory Fishery.