Neuron Platonic Intrinsic Representation From Dynamics Using Contrastive Learning
Wei Wu Can Liao zizhen Deng Zhengrui Guo Jinzhuo Wang
The Platonic Representation Hypothesis posits that behind different modalities of data (what we sense or detect), there exists a universal, modality-independent representation of reality. Inspired by this, we treat each neuron as a system, where we can detect the neuron’s multi-segment activity data under different peripheral conditions. We believe that, similar to the Platonic idea, there exists a time-invariant representation behind the different segments of the same neuron, which reflects the intrinsic properties of the neuron’s system. Intrinsic properties include the molecular profiles, brain regions and morphological structure, etc. The optimization objective for obtaining the intrinsic representation of neurons should satisfy two criteria: (I) segments from the same neuron should have a higher similarity than segments from different neurons; (II) the representations should generalize well to out-of-domain data. To achieve this, we employ contrastive learning, treating different segments from the same neuron as positive pairs and segments from different neurons as negative pairs. During the implementation, we chose the VICReg, which uses only positive pairs for optimization but indirectly separates dissimilar samples via regularization terms. To validate the efficacy of our method, we first applied it to simulated neuron population dynamics data generated using the Izhikevich model. We successfully confirmed that our approach captures the type of each neuron as defined by preset hyperparameters. We then applied our method to two real-world neuron dynamics datasets, including spatial transcriptomics-derived neuron type annotations and the brain regions where each neuron is located. The learned representations from our model not only predict neuron type and location but also show robustness when tested on out-of-domain data (unseen animals). This demonstrates the potential of our approach in advancing the understanding of neuronal systems and offers valuable insights for future neuroscience research.
representation learning, biology, neuroscience, contrastive learning
Obtaining Intrinsic Representations of Single Neurons from Dynamics via Contrastive Learning