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Browse files- README.md +69 -0
- evaluation.parquet +3 -0
- test.parquet +3 -0
- train.parquet +3 -0
- validation.parquet +3 -0
README.md
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---
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language: rna
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tags:
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- Biology
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- RNA
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license:
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- agpl-3.0
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size_categories:
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- 100K<n<1M
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source_datasets:
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- multimolecule/pdb
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task_categories:
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- text-generation
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- fill-mask
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task_ids:
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- language-modeling
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- masked-language-modeling
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pretty_name: pdb-rna_secondary_structure
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library_name: multimolecule
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---
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# pdb-rna_secondary_structure
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> [!IMPORTANT]
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> The pdb-rna_secondary_structure dataset is in beta test.
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> This dataset card may not accurately reflects the data content.
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> The data content and this dataset card may subject to change.
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>
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> Please contact the MultiMolecule team on GitHub issues should you have any feedback.
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> [!CAUTION]
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> This dataset is converted from the dataset released by the authors of SPOT-RNA.
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> The MultiMolecule is aware of a potential issue in data quality.
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> We are working on cleaning the dataset.
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RCSB Protein Data Bank (RCSB PDB) enables breakthroughs in science and education by providing access and tools for exploration, visualization, and analysis of:
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- Experimentally-determined 3D structures from the Protein Data Bank (PDB) archive
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- Computed Structure Models (CSM) from AlphaFold DB and ModelArchive
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The PDB-rna_secondary_structure is a subset of the PDB dataset focusing on the secondary structure of RNA.
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## Disclaimer
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This is an UNOFFICIAL release of the RNA Secondary Structure data in the [Protein Data Bank](https://www.rcsb.org).
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**The team releasing Protein Data Bank did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.**
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## Dataset Description
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- **Homepage**: https://multimolecule.danling.org/datasets/pdb-rna_secondary_structure
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- **datasets**: https://huggingface.co/datasets/multimolecule/pdb-rna_secondary_structure
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- **Point of Contact**: [RCSB PDB](https://www.rcsb.org/pages/contactus)
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## Example Entry
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| id | sequence | secondary_structure |
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| -------- | ----------------------------------- | -------------------------------- |
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| 1c0a-1-B | GGAGCGGUAGUUCAGUCGGUUAGAAUACCUGC... | (((((((([{{[[)<..AB).)]]}}(((... |
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## License
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This dataset is licensed under the [AGPL-3.0 License](https://www.gnu.org/licenses/agpl-3.0.html).
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```spdx
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SPDX-License-Identifier: AGPL-3.0-or-later
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```
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evaluation.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:b2c0a081d9a16a84368fd5fc4f7a914029564428134f655ba8e7edad3260e046
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size 2906
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test.parquet
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version https://git-lfs.github.com/spec/v1
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size 5227
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train.parquet
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version https://git-lfs.github.com/spec/v1
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size 8305
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validation.parquet
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version https://git-lfs.github.com/spec/v1
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size 3368
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