text: Numerous niche applications exploit the intense color of MG. It is used as a biological stain for microscopic analysis of cell biology and tissue samples. In the Gimenez staining method, basic fuchsin stains bacteria red or magenta, and malachite green is used as a blue-green counterstain. Malachite green is also used in endospore staining, since it can directly stain endospores within bacterial cells; here a safranin counterstain is often used. Malachite green is a part of Alexander's pollen stain. Malachite green can also be used as a saturable absorber in dye lasers, or as a pH indicator between pH 0.2–1.8. However, this use is relatively rare. Leuco-malachite green (LMG) is used as a detection method for latent blood in forensic science. Hemoglobin catalyzes the reaction between LMG and hydrogen peroxide, converting the colorless LMG into malachite green. Therefore, the appearance of a green color indicates the presence of blood.
  A set of malachite green derivatives is also a key component in a fluorescence microscopy tool called the fluorogen activating protein/fluorogen system. Malachite green is in a class of molecules called fluorophores.  When malachite greens rotational freedom is restricted, it transforms from a non fluorescent molecule to a highly fluorescent molecule. In the fluorogen activating protein tool, established by a group at Carnegie Mellon University, Malachite green binds a specific fluorogen activating protein to become highly fluorescent. Expression of the fluorogen activating protein as fusions of targeting domains can impart subcellular localization. Its use is similar to that of GFP but has the added benefit of having a dark state' before the malachite green fluorophore is added. This is especially useful for FRET studies.