text: * 1982 Ledlie Prize, Harvard University
  * 1988 Wallace P. Rowe Award, National Institute of Allergy and Infectious Diseases
  * 1990 Louisa Gross Horwitz Prize (with Don Wiley and Michael Rossmann), Columbia University
  * 1990 Harvey Lecturer, The Harvey Society, New York
  * 1995 George Ledlie Prize, Harvard University
  * 1997 ICN International Prize in Virology
  * 2001 Paul Ehrlich and Ludwig Darmstaedter Prize (with Michael Rossmann)
  * 2005 Bristol-Myers Squibb Award for Distinguished Achievement in Infectious Diseases Research
  * 2006 Gregori Aminoff Prize in Crystallography (with David Stuart)
  * 2007 UCSD/Merck Life Sciences Achievement Award
  * 2011 William Silen Lifetime Achievement in Mentoring Award, Harvard Medical School
  * 2012 Pauling Lectureship, Stanford University
  * 2014 Elected as a Foreign Member of the Royal Society of London.
  * 2015 The Welch Award in Chemistry
  * 2015 Honorary Doctorate in Medicine, University of Milan
  * 2018 48th Rosenstiel Award for research on proteins and viruses.