Bioinformatics, Rstats, Deep Dives, Notes From Industry, Reproducibility.
notice that I have to run a line on code on two or more files. In this way, I don’t have to mess around with changing and deleting variables in a shell/python script, and by using a snakefile this the code runs on one input file or a thousand. Snippet from bcl2fastq with snakemake. Even if you