Exploring Mechanisms of Lang Qing Ata in Non-Alcoholic Steatohepatitis Based on Metabolomics, Network Pharmacological Analysis, and Experimental Validation
Non-alcoholic fatty liver disease (NAFLD) is a common condition characterized by hepatic steatosis or significant lipid deposition in the hepatocytes. This is without influence from other lipid sources including some drugs, high alcohol intake, or specific genetic diseases. A particular variant of this disease is non-alcoholic steatohepatitis (NASH) which is defined clinically and pathologically by the combination of steatosis, inflammation, and fibrosis as a consequence of fat overload in hepatocytes. NASH is the most advanced and potentially irreversible stage of NAFLD that is characterized by the development of more severe complications such as liver fibrosis, cirrhosis, and even hepatocellular carcinoma. This condition often occurs with other metabolic diseases, such as type 2 diabetes, obesity, and insulin resistance, which increase the risk of inflammation in the body. , Hence, the prevalence of cardiovascular diseases and malignancies is high amongst individuals who have been diagnosed with NASH, which in turn increases the mortality rate of such patients. Nuclear factor-kappa B (NF-κB) is a protein complex and an essential atomic transcription factor in cells, participating in inflammatory responses, immune responses, regulating cell apoptosis, and stress responses. It serves as the most significant regulator of inflammation. The NF-κB protein complex is composed of five distinct subunits: The major family members are: RelA (p65), NF-κB (p100/p52), NF-κB1 (p105/p50), RelB, and cRel. Because the IκB kinase (IKK) complex should be activated for the initiation of the canonical signaling pathway leading to NF-κB activation. , In NASH the NF-κB pathway is upregulated and in many cases, there is an increase in the levels of proinflammatory cytokines like IL-6, TNF-α, and IL-1β , that are frequently found in obese patients. Therefore, this signaling plays a critical role in the advancement of NASH. In their preliminary basic research on liver fibrosis, Xuan et al found that LQAtta can alleviate liver fibrosis by inhibiting the expression of p38 and NF-κB. Lang Qing Ata (LQAtta), also known as Hua Gan Tong Luo Fang, is a renowned empirical prescription in Tibetan medicine for treating liver diseases. This formula possesses the efficacy of reducing body heat and detoxifying, as well as soothing the liver and promoting bile flow It has been transmitted for over five hundred years and constitutes an integral part of China’s ethnic medicine. In Traditional Chinese Medicine (TCM) theory, the etiology of NASH is complex, often attributed to dietary indulgence, emotional injury, excessive strain or idleness, leading to dysfunction of the liver, spleen, and kidney, internal generation of phlegm-dampness, and blood stasis obstructing the liver meridians. Since 2007, under the funding of Jiangsu Provincial Science and Technology Department (NO.BS2007089), Professor Tian Yaozhou’s research team has collaborated with Lhasa Plateau Biology Research Institute to jointly develop the Tibetan medicine Lang Qing Ata (Hua Gan Tong Luo Fang). Through relentless efforts, the pharmacological and toxicological evaluations of this medicine have been completed, and it has successfully obtained an SFDA clinical approval (Batch Number: 2012L00847) as well as a national invention patent (Patent Application Number: 201010187089.9). Currently, it is being used in clinical treatment. The research team , has previously published multiple Chinese and English papers, fully demonstrating the significant effects of LQAtta in treating liver cirrhosis and fibrosis, improving liver function, protecting hepatocytes, and repairing liver tissue. In clinical practice for treating liver fibrosis, we found that this formula exhibits particularly prominent efficacy in treating liver fibrosis caused by NASH. We focused on NASH not only because previous studies have shown that LQAtta is effective against hepatic fibrosis caused by NASH, but also based on the close pathological relationship between NASH and hepatic fibrosis. NASH is a progressive liver disease. Its persistent inflammatory response and oxidative stress can lead to excessive deposition of the extracellular matrix in the liver, thus progressing to hepatic fibrosis. When treating hepatic fibrosis, LQAtta may exert its effects through mechanisms such as regulating the activation of hepatic stellate cells, inhibiting the release of inflammatory cytokines, and improving the redox state of the liver. Given the overlap in the pathological processes of NASH and hepatic fibrosis, we speculate that LQAtta can also improve the condition of NASH through these mechanisms or by further regulating the unique pathological links of NASH, such as lipid metabolism disorders. Based on previous research findings, , we will continue to focus on NASH, a growing global health challenge, and preliminarily explore the mechanism of action of LQAtta therein. Metabolomics, an emerging field developed based on mass spectrometry technology, assesses the metabolic processes and functions of organisms by detecting and analyzing metabolomes. Currently, the field of metabolomics, as highlighted in the work of Wu et al, holds a pivotal role in elucidating the underlying material constituents and mechanisms of action associated with traditional Chinese medicines (TCMs). Consequently, this approach offers profound insights into the therapeutic efficacy and scientific rationale behind their use in treating a multitude of diseases. Network pharmacology is a burgeoning discipline rooted in systems biology theory and biological system network analysis. It emphasizes the importance of identifying specificity signal nodes within complex biological networks, which can guide the design of multi-target drugs. These drugs are tailored to interact with multiple molecular targets simultaneously, offering a more holistic approach to treating diseases. The mechanism of action of TCM prescriptions has multi-target and multi-level characteristics, which are similar to the integrity, systematization, and comprehensiveness of network pharmacology. Therefore, network pharmacology is suitable for the pharmacological study of traditional Chinese medicine compounds. This study aims to investigate the potential pathways of LQAtta in regulating NASH through metabolomics and mouse models and predict possible targets through network pharmacology. It is hoped that this research will provide new therapeutic approaches for the treatment of non-alcoholic fatty liver disease. 

Experimental Animals During this study, the animal experiment protocols received formal authorization from the Animal Protection and Experimental Animal Use and Management Committee of Jinling Clinical Medical College, Nanjing University of Chinese Medicine (Ethics Approval Number: DZISSDWLS240085), which ensured strict adherence to the guidelines established by the National Institutes of Health (NIH). The facility maintained for the animals was devoid of specific pathogens and controlled for both temperature and humidity, with a consistent 12-hour cycle of light and darkness. Mice, specifically male C57BL/6J weighing between 16 and 18 grams, were used. These mice had access to either standard or diet-specific food formulations, depending on the requirements of the study, and could drink from an unlimited supply of filtered water. Experimental Design Experimental Grouping In the study, three experimental cohorts of mice, each consisting of eight individuals, were established through random allocation. The first cohort, referred to as the control group, received a standard dietary regimen. The second, identified as the model group, received a diet enriched with high levels of fat and cholesterol. The third group, designated as the LQAtta group, was subjected to a similar high-fat and high-cholesterol (HFHC) diet but was additionally treated with LQAtta. Establishment of Mouse Non-Alcoholic Steatohepatitis Model For 20 weeks, a model for NASH was developed through the administration of a diet high in fat and cholesterol, consisting of 88% standard feed, 10% lard, and 2% cholesterol. Both the control group and the LQAtta group received an HFHC diet while having unlimited access to sterile water. LQAtta Treatment At the 8-week mark of the induction phase, two mice were selected at random from each experimental group for model assessment. Following this, the mice subjected to an HFHC diet were further separated into two distinct subgroups: ① NASH group, and ② LQAtta group. The LQAtta group was fed with an HFHC diet supplemented with LQAtta until sacrifice at 16 weeks and 20 weeks. Drug Preparation LQAtta  is Bovis Calculus Artifactus (0.1g), Carthamus tinctorius L. [Asteraceae](15g), Trogopterori faeces (15g), Phyllanthus emblica L. [Phyllanthaceae](30g), Swertia bimaculata (Siebold & Zucc). Hook.f. and Thomson ex C.B.Clarke [Gentianaceae](15g), Myristica fragrans Houtt. [Myristicaceae](10g), Astragalus mongholicus Bunge [Fabaceae](25g), Dolomiaea costus (Falc). Kasana & A.K.Pandey [Asteraceae](10g), Saxifraga stolonifera Curtis [Saxifragaceae](15g), Coriandrum sativum L. [Apiaceae](10g), Aquilaria sinensis (Lour). Spreng. [Thymelaeaceae] (3g), Punica granatum L. [Lythraceae](20g), Rhododendron anthopogonoides Maxim. [Ericaceae](8g), Malva verticillata var. verticillata [Malvaceae](15g), and Glycyrrhiza uralensis Fisch. ex DC. [Fabaceae](10 g). The plant names have been verified using http://www.plantsoftheworldonline.org . The ratio is 0.02:3:3:6:3:2:5:2:3:2:0.6:4:1.6:3:2. Bovis Calculus Artifactus is made from ox bile powder, cholic acid, hyodeoxycholic acid, taurine, bilirubin, cholesterol and trace elements. LQAtta granules were provided by Jiangsu Provincial Hospital of Integrated Traditional Chinese and Western Medicine. The names of the botanists who formally identified the plants and the references of the voucher specimens deposited in a public herbarium are provided in Supplement Material 1 . The Origin of Plant Materials Bovis Calculus Artifactus was purchased from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 2211011). Carthamus tinctorius L . was purchased from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23051001). Trogopterori faeces was sourced from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 446 - 1 - 240501). Phyllanthus emblica L . was obtained from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050301). Swertia bimaculata (Siebold & Zucc). Hook.f. and Thomson ex C.B.Clarke was bought from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050501). Myristica fragrans Houtt . was bought from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 314 - 1 - 230201). Astragalus mongholicus Bunge was purchased from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 226 - 231001). Dolomiaea costus (Falc). Kasana & A.K.Pandey was sourced from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 036 - 236001). Saxifraga stolonifera Curtis was obtained from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050601). Coriandrum sativum L . was bought from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050701). Aquilaria sinensis (Lour). Spreng was sourced from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 596 - 240201). Punica granatum L . was purchased from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050301). Rhododendron anthopogonoides Maxim was bought from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050201). Malva verticillata var. verticillata was obtained from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050801). Glycyrrhiza uralensis Fisch. ex DC . was sourced from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 234 - 231201). In the prescription, Myristica fragrans, Coriandrum sativum, Dolomiaea costus, Aquilaria malaccensis , and Rhododendron anthopogonoides were extracted with ten times their volume of water using steam distillation for five hours to collect volatile oil. The aqueous extract and herbal residue were stored separately. Volatile oil-β-cyclodextrin inclusion complexes were prepared by first dissolving β-cyclodextrin in water heated to 60°C in a ratio of volatile oil: β-cyclodextrin: water (1:10:100), then adding the volatile oil with stirring for four hours. After cooling, the mixture was refrigerated overnight, filtered, and the precipitate was dried at 40°C and crushed for storage. Additionally, Carthamus tinctorius, Trogopterori faeces, Phyllanthus emblica, Astragalus mongholicus Bunge, Swertia bimaculata, Saxifraga stolonifera, Malva verticillata, Punica granatum, and Glycyrrhiza uralensis , along with the herbal residue from the volatile oil extraction of Myristica fragrans et al, were decocted three times with ten times their volume of water for one hour each. The decoctions were filtered, and the filtrates were combined with the previous aqueous extract. The combined filtrate was concentrated under reduced pressure to form an extract with a relative density of 1.05 to 1.10 at 60°C. After cooling and centrifugation, the supernatant was further concentrated into an extract with a relative density of 1.25 to 1.30 at 60°C. The concentrated extract was then dried under reduced pressure, crushed, and stored as dry extract powder. Finally, Bovis Calculus Artifactus , the dry extract powder, volatile oil-β-cyclodextrin inclusion complexes, dextrin, and stevioside were mixed uniformly, granulated, and packaged to obtain the final product. In previous experiments, , based on the body surface area and human/rat dose conversion, different doses of LQAtta have been used (11 g /kg, 5.5 g/kg, 2.75 g /kg), and 11 g /kg was found to have good efficacy. Therefore, in this study, a dose of 11 g /kg LQAtta was selected. Reagents and Instruments LC-MS grade methanol (MeOH) was purchased from Fisher Scientific (Loughborough, UK). 2-Amino-3-(2-chloro-phenyl)-propionic acid was obtained from Aladdin (Shanghai, China). Ultrapure water was generated using a Milli-Q system (Millipore, Bedford, USA). Acetonitrile (ACN) was purchased from Fisher Scientific (Loughborough, UK). Formic acid was obtained from TCI (Shanghai, China). Ammonium formate was obtained from Sigma-Aldrich (Shanghai, China). Ultrapure water was generated using a Milli-Q system (Millipore, Bedford, USA). High-speed freezing centrifuge was obtained from Hunan Xiangyi Experiment Equipment Co., Ltd. (Hunan, China). The vortex mixer was obtained from Haimen Kylin-bell Lab Instruments Co., Ltd. (Haimen, China). The centrifugal vacuum evaporator was from Eppendorf China Ltd. (Shanghai, China). Ultrasonic cleaner was obtained from Kunshan Shumei Experiment Equipment Co., Ltd. (Kunshan, China). The tissue grinder was obtained from Zhejiang Meibi Experiment Equipment Co., Ltd. (Zhejiang, China). Microporous membrane filters (0.22 µm) were purchased from Tianjin Jinteng Experiment Equipment Co., Ltd. (Tianjin, China). Sample Preparation and On-Machine Detection Drug Sample Preparation Accurately weigh an appropriate amount of sample into a 2 mL centrifuge tube, add 600 µL MeOH (Containing 2-Amino-3-(2-chloro-phenyl)-propionic acid(4 ppm), vortex for 30s; Add steel balls, placed in a tissue grinder for 60s at 55 hz; Room temperature ultrasound for 15 min; Centrifuge for 10 min at 12,000 rpm and 4°C, filter the supernatant by 0.22 μm membrane, and transfer into the detection bottle for LC-MS detection. Serum Sample Preparation Thaw the experimental sample at 4°C, vortex the sample for 1 min after thawing, and mix evenly; Accurately transfer an appropriate amount of sample into a 2 mL centrifuge tube; Add 400 µL methanol and vortex for 1 min; Centrifuge for 10 min at 12,000 rpm and 4 °C, take all the supernatant transfer it to a new 2 mL centrifuge tube, concentrate, and dry it; Add 150 µL of 2-chloro-l-phenylalanine (4 ppm) solution prepared with 80% methanol-water to redissolve the sample, filter the supernatant by 0.22 μm membrane and transfer it into the detection bottle for LC-MS detection. On-Machine Detection Liquid Chromatography Conditions The LC analysis was performed on a Vanquish UHPLC System (Thermo Fisher Scientific, USA). Chromatography was carried out with an ACQUITY UPLC ® HSS T3 (2.1×100 mm, 1.8 µm) (Waters, Milford, MA, USA). The column was maintained at 40 °C. The flow rate and injection volume were set at 0.3 mL/min and 2 μL, respectively. For LC-ESI -MS analysis, the mobile phases consisted of (B2) 0.1% formic acid in acetonitrile (v/v) and (A2) 0.1% formic acid in water (v/v). Separation was conducted under the following gradient: 0~1 min, 8% B2; 1~8 min, 8%~98% B2; 8~10 min, 98% B2; 10~10.1 min, 98%~8% B2; 10.1~12 min, 8% B2. For LC-ESI -MS analysis, the analytes were carried out with (B3) acetonitrile and (A3) ammonium formate (5 mm). Separation was conducted under the following gradient: 0~1 min, 8% B3; 1~8 min, 8%~98% B3; 8~10 min, 98% B3; 10~10.1 min, 98%~8% B3; 10.1~12 min, 8% B3. Mass Spectrum Conditions Mass spectrometric detection of metabolites was performed on Q Exactive Focus (Thermo Fisher Scientific, USA) with ESI ion source. Simultaneous MS1 and MS/MS (Full MS-ddMS2 mode, data-dependent MS/MS) acquisition was used. The parameters were as follows: sheath gas pressure, 40 arb; aux gas flow, 10 arb; spray voltage, 3.50 kV and −2.50 kV for ESI and ESI, respectively; capillary temperature, 325 °C; MS1 range, m/z 100–1000; MS1 resolving power, 70000 FWHM; number of data dependant scans per cycle, 3; MS/MS resolving power, 17500 FWHM; normalized collision energy, 30 eV; dynamic exclusion time, automatic. Network Pharmacological Analysis Acquisition of Chemical Components and Disease Targets The chemical components of “Bovis Calculus Artifactus”, “Carthamus tinctorius”, “Phyllanthus emblica”, and “Saxifraga stolonifer” were retrieved from the TCSMP database at https://old.tcmsp-e.com/ . Active components were selected based on the criteria of “OB ≥ 30% and DL ≥ 0.18”. The targets of these active components were searched for, and the corresponding Gene symbols for the protein targets were identified through the UniProt database at https://www.uniprot.org/ . Additionally, the active components and their targets of “ Swertia bimaculata ” and “ Trogopterori faeces ” were searched using the BATMAN database at http://bionet.ncpsb.org.cn/batman-tcm/ , with the criteria of “Score cutoff > 20 and Adjusted P-value < 0.05”. The identified targets were then standardized using the UniProt database. With “NASH” as the disease term, keywords were searched in the GeneCards database at https://www.genecards.org/ and the OMIM database at https://omim.org/mimmatch/ . Duplicate entries were removed after merging. The Venny 2.1 platform was utilized to draw a Venn diagram for screening common targets between chemical components and the disease. Construction of Protein-Protein Interaction (PPI) Network and Acquisition of Core Targets The common targets were imported into the String database at https://string-db.org/ . The mode was set to “multiple proteins”, and the organism was selected as Homo sapiens. The minimum required interaction score was set to 0.7 to remove single proteins without interactions. The downloaded TSV file was imported into Cytoscape 3.8.2 software, and the CytoNCA plugin was used to calculate the Degree of Centrality (DC). The top 20 targets with the highest DC values were selected as core targets. Simultaneously, the PPI network diagram was drawn using Cytoscape software. GO Enrichment Analysis and KEGG Pathway Analysis The 20 core targets were individually imported into the DAVID database at https://david.ncifcrf.gov/ for GO (Gene Ontology) enrichment analysis and KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway analysis, with Homo sapiens selected as the species. Visualizations were conducted using the Weishengxin platform at http://www.bioinformatics.com.cn/ . Construction of the “Component-Core Target-Pathway” Diagram The Cytoscape software was used to construct and analyze the component-target-pathway diagram. Nodes represented chemical components, core targets, and pathways, while edges represented the interaction relationships between nodes. Assays for Serum and Liver Biochemical Markers After the LQAtta treatment, mice were anesthetized with 3% pentobarbital, their whiskers were trimmed, and the eyeballs were removed. Blood samples were drawn into tubes that included a clotting agent, and then subjected to centrifugation at 3000 rpm for 15 minutes at ambient temperature. Following this, the separated serum layer was meticulously isolated and subsequently preserved at a temperature of −80°C, ensuring its availability for upcoming analytical procedures. Following blood collection, mice underwent euthanasia through cervical dislocation. The liver was then visually inspected for any gross morphological changes before being excised and weighed. For histological evaluation, a liver lobe segment was fixed in 4% paraformaldehyde solution overnight, followed by preparation for embedding and subsequent sectioning. The residual liver tissue was immediately transferred to cryotubes and subsequently immersed in liquid nitrogen, ensuring preservation for forthcoming experimental procedures. The assessment of liver functionality and lipid profiles within the bloodstream utilized a state-of-the-art fully automated biochemical analyzer. The assessments done in this analysis involved some parameters that are relevant to liver function such as alanine aminotransferase (ALT) and aspartate aminotransferase (AST). Moreover, the assessment of lipid profile focused on the measurement of Total Cholesterol (CHO). Histopathological Examination of the Liver Histopathological evaluation of liver tissue: The histological examination of different structures and in particular the presence of lipids in the liver sections of mice was done using both the HE staining procedure and Oil Red O staining methods. Also, the degree of fibrosis was assessed from the Sirius Red staining of these sections. Immunohistochemical Staining Evaluation of immune cell infiltration: To evaluate the extent of infiltration by macrophages and CD4 and CD8 T cells in mouse liver tissue, sections were subjected to immunohistochemical analysis using antibodies specific for F4/80, CD4, and CD8 markers. In addition, immunohistochemistry of p-NF-κB p65 and NF-κB p65 was also performed. This method allowed for a detailed assessment of immune cell presence within the hepatic environment. Quantification of mRNA Expression Detailed quantitative evaluations were conducted to accurately measure the levels of specific proinflammatory cytokines, which include IL-1β, IL-6, and TNF-α, present in samples of liver tissue. Total RNA was extracted from liver samples using TRIzol reagent (GlpBio Technology, GK20008-100). Reverse transcription was then performed using HiScript ® II Q RT SuperMix (Vazyme Biotech, R223-01) according to the manufacturer’s instructions. The PCR amplification products were quantified using a real-time PCR system (LightCycler480 Instrument II) in conjunction with SYBR Green reagent (Vazyme Biotech, Q711-02). The mRNA expression levels of target genes were normalized to that of β-actin using the comparative CT (2 −ΔΔCt ) method. The primer sequences for mice are listed in . Western Blotting Liver tissue extracts were lysed using Radioimmunoprecipitation (RIPA) buffer containing a protease inhibitor cocktail (GlpBio Technology, GK10014) and a phosphatase inhibitor cocktail (GlpBio Technology, GK10012). For Western blot analysis, equal amounts of protein were subjected to Sodium Dodecyl Sulfate-Polyacrylamide Gel Electrophoresis (SDS-PAGE) and subsequently electrotransferred onto PVDF membranes (Millipore). The membranes were incubated in 5% skimmed milk or 3% bovine serum albumin before being blotted with specific primary antibodies. Following incubation with horseradish peroxidase (HRP)-conjugated secondary antibodies, the membranes were detected using a chemiluminescent Western blot detection system (Bio-Rad Laboratories, CA, USA). Density measurements were performed using ImageJ software (Fujifilm, Tokyo, Japan). Detection of NF-κB Pathway Indicators: The technique of Western blotting was utilized to assess the levels of p-NF-κB p65 and NF-κB p65 in liver tissues. 

During this study, the animal experiment protocols received formal authorization from the Animal Protection and Experimental Animal Use and Management Committee of Jinling Clinical Medical College, Nanjing University of Chinese Medicine (Ethics Approval Number: DZISSDWLS240085), which ensured strict adherence to the guidelines established by the National Institutes of Health (NIH). The facility maintained for the animals was devoid of specific pathogens and controlled for both temperature and humidity, with a consistent 12-hour cycle of light and darkness. Mice, specifically male C57BL/6J weighing between 16 and 18 grams, were used. These mice had access to either standard or diet-specific food formulations, depending on the requirements of the study, and could drink from an unlimited supply of filtered water. 

Experimental Grouping In the study, three experimental cohorts of mice, each consisting of eight individuals, were established through random allocation. The first cohort, referred to as the control group, received a standard dietary regimen. The second, identified as the model group, received a diet enriched with high levels of fat and cholesterol. The third group, designated as the LQAtta group, was subjected to a similar high-fat and high-cholesterol (HFHC) diet but was additionally treated with LQAtta. Establishment of Mouse Non-Alcoholic Steatohepatitis Model For 20 weeks, a model for NASH was developed through the administration of a diet high in fat and cholesterol, consisting of 88% standard feed, 10% lard, and 2% cholesterol. Both the control group and the LQAtta group received an HFHC diet while having unlimited access to sterile water. LQAtta Treatment At the 8-week mark of the induction phase, two mice were selected at random from each experimental group for model assessment. Following this, the mice subjected to an HFHC diet were further separated into two distinct subgroups: ① NASH group, and ② LQAtta group. The LQAtta group was fed with an HFHC diet supplemented with LQAtta until sacrifice at 16 weeks and 20 weeks. 

In the study, three experimental cohorts of mice, each consisting of eight individuals, were established through random allocation. The first cohort, referred to as the control group, received a standard dietary regimen. The second, identified as the model group, received a diet enriched with high levels of fat and cholesterol. The third group, designated as the LQAtta group, was subjected to a similar high-fat and high-cholesterol (HFHC) diet but was additionally treated with LQAtta. 

For 20 weeks, a model for NASH was developed through the administration of a diet high in fat and cholesterol, consisting of 88% standard feed, 10% lard, and 2% cholesterol. Both the control group and the LQAtta group received an HFHC diet while having unlimited access to sterile water. 

At the 8-week mark of the induction phase, two mice were selected at random from each experimental group for model assessment. Following this, the mice subjected to an HFHC diet were further separated into two distinct subgroups: ① NASH group, and ② LQAtta group. The LQAtta group was fed with an HFHC diet supplemented with LQAtta until sacrifice at 16 weeks and 20 weeks. 

LQAtta  is Bovis Calculus Artifactus (0.1g), Carthamus tinctorius L. [Asteraceae](15g), Trogopterori faeces (15g), Phyllanthus emblica L. [Phyllanthaceae](30g), Swertia bimaculata (Siebold & Zucc). Hook.f. and Thomson ex C.B.Clarke [Gentianaceae](15g), Myristica fragrans Houtt. [Myristicaceae](10g), Astragalus mongholicus Bunge [Fabaceae](25g), Dolomiaea costus (Falc). Kasana & A.K.Pandey [Asteraceae](10g), Saxifraga stolonifera Curtis [Saxifragaceae](15g), Coriandrum sativum L. [Apiaceae](10g), Aquilaria sinensis (Lour). Spreng. [Thymelaeaceae] (3g), Punica granatum L. [Lythraceae](20g), Rhododendron anthopogonoides Maxim. [Ericaceae](8g), Malva verticillata var. verticillata [Malvaceae](15g), and Glycyrrhiza uralensis Fisch. ex DC. [Fabaceae](10 g). The plant names have been verified using http://www.plantsoftheworldonline.org . The ratio is 0.02:3:3:6:3:2:5:2:3:2:0.6:4:1.6:3:2. Bovis Calculus Artifactus is made from ox bile powder, cholic acid, hyodeoxycholic acid, taurine, bilirubin, cholesterol and trace elements. LQAtta granules were provided by Jiangsu Provincial Hospital of Integrated Traditional Chinese and Western Medicine. The names of the botanists who formally identified the plants and the references of the voucher specimens deposited in a public herbarium are provided in Supplement Material 1 . The Origin of Plant Materials Bovis Calculus Artifactus was purchased from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 2211011). Carthamus tinctorius L . was purchased from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23051001). Trogopterori faeces was sourced from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 446 - 1 - 240501). Phyllanthus emblica L . was obtained from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050301). Swertia bimaculata (Siebold & Zucc). Hook.f. and Thomson ex C.B.Clarke was bought from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050501). Myristica fragrans Houtt . was bought from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 314 - 1 - 230201). Astragalus mongholicus Bunge was purchased from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 226 - 231001). Dolomiaea costus (Falc). Kasana & A.K.Pandey was sourced from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 036 - 236001). Saxifraga stolonifera Curtis was obtained from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050601). Coriandrum sativum L . was bought from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050701). Aquilaria sinensis (Lour). Spreng was sourced from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 596 - 240201). Punica granatum L . was purchased from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050301). Rhododendron anthopogonoides Maxim was bought from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050201). Malva verticillata var. verticillata was obtained from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050801). Glycyrrhiza uralensis Fisch. ex DC . was sourced from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 234 - 231201). In the prescription, Myristica fragrans, Coriandrum sativum, Dolomiaea costus, Aquilaria malaccensis , and Rhododendron anthopogonoides were extracted with ten times their volume of water using steam distillation for five hours to collect volatile oil. The aqueous extract and herbal residue were stored separately. Volatile oil-β-cyclodextrin inclusion complexes were prepared by first dissolving β-cyclodextrin in water heated to 60°C in a ratio of volatile oil: β-cyclodextrin: water (1:10:100), then adding the volatile oil with stirring for four hours. After cooling, the mixture was refrigerated overnight, filtered, and the precipitate was dried at 40°C and crushed for storage. Additionally, Carthamus tinctorius, Trogopterori faeces, Phyllanthus emblica, Astragalus mongholicus Bunge, Swertia bimaculata, Saxifraga stolonifera, Malva verticillata, Punica granatum, and Glycyrrhiza uralensis , along with the herbal residue from the volatile oil extraction of Myristica fragrans et al, were decocted three times with ten times their volume of water for one hour each. The decoctions were filtered, and the filtrates were combined with the previous aqueous extract. The combined filtrate was concentrated under reduced pressure to form an extract with a relative density of 1.05 to 1.10 at 60°C. After cooling and centrifugation, the supernatant was further concentrated into an extract with a relative density of 1.25 to 1.30 at 60°C. The concentrated extract was then dried under reduced pressure, crushed, and stored as dry extract powder. Finally, Bovis Calculus Artifactus , the dry extract powder, volatile oil-β-cyclodextrin inclusion complexes, dextrin, and stevioside were mixed uniformly, granulated, and packaged to obtain the final product. In previous experiments, , based on the body surface area and human/rat dose conversion, different doses of LQAtta have been used (11 g /kg, 5.5 g/kg, 2.75 g /kg), and 11 g /kg was found to have good efficacy. Therefore, in this study, a dose of 11 g /kg LQAtta was selected. 

Bovis Calculus Artifactus was purchased from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 2211011). Carthamus tinctorius L . was purchased from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23051001). Trogopterori faeces was sourced from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 446 - 1 - 240501). Phyllanthus emblica L . was obtained from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050301). Swertia bimaculata (Siebold & Zucc). Hook.f. and Thomson ex C.B.Clarke was bought from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050501). Myristica fragrans Houtt . was bought from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 314 - 1 - 230201). Astragalus mongholicus Bunge was purchased from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 226 - 231001). Dolomiaea costus (Falc). Kasana & A.K.Pandey was sourced from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 036 - 236001). Saxifraga stolonifera Curtis was obtained from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050601). Coriandrum sativum L . was bought from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050701). Aquilaria sinensis (Lour). Spreng was sourced from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 596 - 240201). Punica granatum L . was purchased from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050301). Rhododendron anthopogonoides Maxim was bought from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050201). Malva verticillata var. verticillata was obtained from Bozhou Qiaojuntang Chinese Herbal Pieces Co., Ltd (Batch No.: 23050801). Glycyrrhiza uralensis Fisch. ex DC . was sourced from Anhui Zhu’s Pharmaceutical Chinese Herbal Pieces Co., Ltd (Batch No.: CJ - 234 - 231201). In the prescription, Myristica fragrans, Coriandrum sativum, Dolomiaea costus, Aquilaria malaccensis , and Rhododendron anthopogonoides were extracted with ten times their volume of water using steam distillation for five hours to collect volatile oil. The aqueous extract and herbal residue were stored separately. Volatile oil-β-cyclodextrin inclusion complexes were prepared by first dissolving β-cyclodextrin in water heated to 60°C in a ratio of volatile oil: β-cyclodextrin: water (1:10:100), then adding the volatile oil with stirring for four hours. After cooling, the mixture was refrigerated overnight, filtered, and the precipitate was dried at 40°C and crushed for storage. Additionally, Carthamus tinctorius, Trogopterori faeces, Phyllanthus emblica, Astragalus mongholicus Bunge, Swertia bimaculata, Saxifraga stolonifera, Malva verticillata, Punica granatum, and Glycyrrhiza uralensis , along with the herbal residue from the volatile oil extraction of Myristica fragrans et al, were decocted three times with ten times their volume of water for one hour each. The decoctions were filtered, and the filtrates were combined with the previous aqueous extract. The combined filtrate was concentrated under reduced pressure to form an extract with a relative density of 1.05 to 1.10 at 60°C. After cooling and centrifugation, the supernatant was further concentrated into an extract with a relative density of 1.25 to 1.30 at 60°C. The concentrated extract was then dried under reduced pressure, crushed, and stored as dry extract powder. Finally, Bovis Calculus Artifactus , the dry extract powder, volatile oil-β-cyclodextrin inclusion complexes, dextrin, and stevioside were mixed uniformly, granulated, and packaged to obtain the final product. In previous experiments, , based on the body surface area and human/rat dose conversion, different doses of LQAtta have been used (11 g /kg, 5.5 g/kg, 2.75 g /kg), and 11 g /kg was found to have good efficacy. Therefore, in this study, a dose of 11 g /kg LQAtta was selected. 

LC-MS grade methanol (MeOH) was purchased from Fisher Scientific (Loughborough, UK). 2-Amino-3-(2-chloro-phenyl)-propionic acid was obtained from Aladdin (Shanghai, China). Ultrapure water was generated using a Milli-Q system (Millipore, Bedford, USA). Acetonitrile (ACN) was purchased from Fisher Scientific (Loughborough, UK). Formic acid was obtained from TCI (Shanghai, China). Ammonium formate was obtained from Sigma-Aldrich (Shanghai, China). Ultrapure water was generated using a Milli-Q system (Millipore, Bedford, USA). High-speed freezing centrifuge was obtained from Hunan Xiangyi Experiment Equipment Co., Ltd. (Hunan, China). The vortex mixer was obtained from Haimen Kylin-bell Lab Instruments Co., Ltd. (Haimen, China). The centrifugal vacuum evaporator was from Eppendorf China Ltd. (Shanghai, China). Ultrasonic cleaner was obtained from Kunshan Shumei Experiment Equipment Co., Ltd. (Kunshan, China). The tissue grinder was obtained from Zhejiang Meibi Experiment Equipment Co., Ltd. (Zhejiang, China). Microporous membrane filters (0.22 µm) were purchased from Tianjin Jinteng Experiment Equipment Co., Ltd. (Tianjin, China). 

Drug Sample Preparation Accurately weigh an appropriate amount of sample into a 2 mL centrifuge tube, add 600 µL MeOH (Containing 2-Amino-3-(2-chloro-phenyl)-propionic acid(4 ppm), vortex for 30s; Add steel balls, placed in a tissue grinder for 60s at 55 hz; Room temperature ultrasound for 15 min; Centrifuge for 10 min at 12,000 rpm and 4°C, filter the supernatant by 0.22 μm membrane, and transfer into the detection bottle for LC-MS detection. Serum Sample Preparation Thaw the experimental sample at 4°C, vortex the sample for 1 min after thawing, and mix evenly; Accurately transfer an appropriate amount of sample into a 2 mL centrifuge tube; Add 400 µL methanol and vortex for 1 min; Centrifuge for 10 min at 12,000 rpm and 4 °C, take all the supernatant transfer it to a new 2 mL centrifuge tube, concentrate, and dry it; Add 150 µL of 2-chloro-l-phenylalanine (4 ppm) solution prepared with 80% methanol-water to redissolve the sample, filter the supernatant by 0.22 μm membrane and transfer it into the detection bottle for LC-MS detection. On-Machine Detection Liquid Chromatography Conditions The LC analysis was performed on a Vanquish UHPLC System (Thermo Fisher Scientific, USA). Chromatography was carried out with an ACQUITY UPLC ® HSS T3 (2.1×100 mm, 1.8 µm) (Waters, Milford, MA, USA). The column was maintained at 40 °C. The flow rate and injection volume were set at 0.3 mL/min and 2 μL, respectively. For LC-ESI -MS analysis, the mobile phases consisted of (B2) 0.1% formic acid in acetonitrile (v/v) and (A2) 0.1% formic acid in water (v/v). Separation was conducted under the following gradient: 0~1 min, 8% B2; 1~8 min, 8%~98% B2; 8~10 min, 98% B2; 10~10.1 min, 98%~8% B2; 10.1~12 min, 8% B2. For LC-ESI -MS analysis, the analytes were carried out with (B3) acetonitrile and (A3) ammonium formate (5 mm). Separation was conducted under the following gradient: 0~1 min, 8% B3; 1~8 min, 8%~98% B3; 8~10 min, 98% B3; 10~10.1 min, 98%~8% B3; 10.1~12 min, 8% B3. Mass Spectrum Conditions Mass spectrometric detection of metabolites was performed on Q Exactive Focus (Thermo Fisher Scientific, USA) with ESI ion source. Simultaneous MS1 and MS/MS (Full MS-ddMS2 mode, data-dependent MS/MS) acquisition was used. The parameters were as follows: sheath gas pressure, 40 arb; aux gas flow, 10 arb; spray voltage, 3.50 kV and −2.50 kV for ESI and ESI, respectively; capillary temperature, 325 °C; MS1 range, m/z 100–1000; MS1 resolving power, 70000 FWHM; number of data dependant scans per cycle, 3; MS/MS resolving power, 17500 FWHM; normalized collision energy, 30 eV; dynamic exclusion time, automatic. 

Accurately weigh an appropriate amount of sample into a 2 mL centrifuge tube, add 600 µL MeOH (Containing 2-Amino-3-(2-chloro-phenyl)-propionic acid(4 ppm), vortex for 30s; Add steel balls, placed in a tissue grinder for 60s at 55 hz; Room temperature ultrasound for 15 min; Centrifuge for 10 min at 12,000 rpm and 4°C, filter the supernatant by 0.22 μm membrane, and transfer into the detection bottle for LC-MS detection. 

Thaw the experimental sample at 4°C, vortex the sample for 1 min after thawing, and mix evenly; Accurately transfer an appropriate amount of sample into a 2 mL centrifuge tube; Add 400 µL methanol and vortex for 1 min; Centrifuge for 10 min at 12,000 rpm and 4 °C, take all the supernatant transfer it to a new 2 mL centrifuge tube, concentrate, and dry it; Add 150 µL of 2-chloro-l-phenylalanine (4 ppm) solution prepared with 80% methanol-water to redissolve the sample, filter the supernatant by 0.22 μm membrane and transfer it into the detection bottle for LC-MS detection. 

Liquid Chromatography Conditions The LC analysis was performed on a Vanquish UHPLC System (Thermo Fisher Scientific, USA). Chromatography was carried out with an ACQUITY UPLC ® HSS T3 (2.1×100 mm, 1.8 µm) (Waters, Milford, MA, USA). The column was maintained at 40 °C. The flow rate and injection volume were set at 0.3 mL/min and 2 μL, respectively. For LC-ESI -MS analysis, the mobile phases consisted of (B2) 0.1% formic acid in acetonitrile (v/v) and (A2) 0.1% formic acid in water (v/v). Separation was conducted under the following gradient: 0~1 min, 8% B2; 1~8 min, 8%~98% B2; 8~10 min, 98% B2; 10~10.1 min, 98%~8% B2; 10.1~12 min, 8% B2. For LC-ESI -MS analysis, the analytes were carried out with (B3) acetonitrile and (A3) ammonium formate (5 mm). Separation was conducted under the following gradient: 0~1 min, 8% B3; 1~8 min, 8%~98% B3; 8~10 min, 98% B3; 10~10.1 min, 98%~8% B3; 10.1~12 min, 8% B3. Mass Spectrum Conditions Mass spectrometric detection of metabolites was performed on Q Exactive Focus (Thermo Fisher Scientific, USA) with ESI ion source. Simultaneous MS1 and MS/MS (Full MS-ddMS2 mode, data-dependent MS/MS) acquisition was used. The parameters were as follows: sheath gas pressure, 40 arb; aux gas flow, 10 arb; spray voltage, 3.50 kV and −2.50 kV for ESI and ESI, respectively; capillary temperature, 325 °C; MS1 range, m/z 100–1000; MS1 resolving power, 70000 FWHM; number of data dependant scans per cycle, 3; MS/MS resolving power, 17500 FWHM; normalized collision energy, 30 eV; dynamic exclusion time, automatic. 

The LC analysis was performed on a Vanquish UHPLC System (Thermo Fisher Scientific, USA). Chromatography was carried out with an ACQUITY UPLC ® HSS T3 (2.1×100 mm, 1.8 µm) (Waters, Milford, MA, USA). The column was maintained at 40 °C. The flow rate and injection volume were set at 0.3 mL/min and 2 μL, respectively. For LC-ESI -MS analysis, the mobile phases consisted of (B2) 0.1% formic acid in acetonitrile (v/v) and (A2) 0.1% formic acid in water (v/v). Separation was conducted under the following gradient: 0~1 min, 8% B2; 1~8 min, 8%~98% B2; 8~10 min, 98% B2; 10~10.1 min, 98%~8% B2; 10.1~12 min, 8% B2. For LC-ESI -MS analysis, the analytes were carried out with (B3) acetonitrile and (A3) ammonium formate (5 mm). Separation was conducted under the following gradient: 0~1 min, 8% B3; 1~8 min, 8%~98% B3; 8~10 min, 98% B3; 10~10.1 min, 98%~8% B3; 10.1~12 min, 8% B3. 

Mass spectrometric detection of metabolites was performed on Q Exactive Focus (Thermo Fisher Scientific, USA) with ESI ion source. Simultaneous MS1 and MS/MS (Full MS-ddMS2 mode, data-dependent MS/MS) acquisition was used. The parameters were as follows: sheath gas pressure, 40 arb; aux gas flow, 10 arb; spray voltage, 3.50 kV and −2.50 kV for ESI and ESI, respectively; capillary temperature, 325 °C; MS1 range, m/z 100–1000; MS1 resolving power, 70000 FWHM; number of data dependant scans per cycle, 3; MS/MS resolving power, 17500 FWHM; normalized collision energy, 30 eV; dynamic exclusion time, automatic. 

Acquisition of Chemical Components and Disease Targets The chemical components of “Bovis Calculus Artifactus”, “Carthamus tinctorius”, “Phyllanthus emblica”, and “Saxifraga stolonifer” were retrieved from the TCSMP database at https://old.tcmsp-e.com/ . Active components were selected based on the criteria of “OB ≥ 30% and DL ≥ 0.18”. The targets of these active components were searched for, and the corresponding Gene symbols for the protein targets were identified through the UniProt database at https://www.uniprot.org/ . Additionally, the active components and their targets of “ Swertia bimaculata ” and “ Trogopterori faeces ” were searched using the BATMAN database at http://bionet.ncpsb.org.cn/batman-tcm/ , with the criteria of “Score cutoff > 20 and Adjusted P-value < 0.05”. The identified targets were then standardized using the UniProt database. With “NASH” as the disease term, keywords were searched in the GeneCards database at https://www.genecards.org/ and the OMIM database at https://omim.org/mimmatch/ . Duplicate entries were removed after merging. The Venny 2.1 platform was utilized to draw a Venn diagram for screening common targets between chemical components and the disease. Construction of Protein-Protein Interaction (PPI) Network and Acquisition of Core Targets The common targets were imported into the String database at https://string-db.org/ . The mode was set to “multiple proteins”, and the organism was selected as Homo sapiens. The minimum required interaction score was set to 0.7 to remove single proteins without interactions. The downloaded TSV file was imported into Cytoscape 3.8.2 software, and the CytoNCA plugin was used to calculate the Degree of Centrality (DC). The top 20 targets with the highest DC values were selected as core targets. Simultaneously, the PPI network diagram was drawn using Cytoscape software. GO Enrichment Analysis and KEGG Pathway Analysis The 20 core targets were individually imported into the DAVID database at https://david.ncifcrf.gov/ for GO (Gene Ontology) enrichment analysis and KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway analysis, with Homo sapiens selected as the species. Visualizations were conducted using the Weishengxin platform at http://www.bioinformatics.com.cn/ . Construction of the “Component-Core Target-Pathway” Diagram The Cytoscape software was used to construct and analyze the component-target-pathway diagram. Nodes represented chemical components, core targets, and pathways, while edges represented the interaction relationships between nodes. 

The chemical components of “Bovis Calculus Artifactus”, “Carthamus tinctorius”, “Phyllanthus emblica”, and “Saxifraga stolonifer” were retrieved from the TCSMP database at https://old.tcmsp-e.com/ . Active components were selected based on the criteria of “OB ≥ 30% and DL ≥ 0.18”. The targets of these active components were searched for, and the corresponding Gene symbols for the protein targets were identified through the UniProt database at https://www.uniprot.org/ . Additionally, the active components and their targets of “ Swertia bimaculata ” and “ Trogopterori faeces ” were searched using the BATMAN database at http://bionet.ncpsb.org.cn/batman-tcm/ , with the criteria of “Score cutoff > 20 and Adjusted P-value < 0.05”. The identified targets were then standardized using the UniProt database. With “NASH” as the disease term, keywords were searched in the GeneCards database at https://www.genecards.org/ and the OMIM database at https://omim.org/mimmatch/ . Duplicate entries were removed after merging. The Venny 2.1 platform was utilized to draw a Venn diagram for screening common targets between chemical components and the disease. 

The common targets were imported into the String database at https://string-db.org/ . The mode was set to “multiple proteins”, and the organism was selected as Homo sapiens. The minimum required interaction score was set to 0.7 to remove single proteins without interactions. The downloaded TSV file was imported into Cytoscape 3.8.2 software, and the CytoNCA plugin was used to calculate the Degree of Centrality (DC). The top 20 targets with the highest DC values were selected as core targets. Simultaneously, the PPI network diagram was drawn using Cytoscape software. 

The 20 core targets were individually imported into the DAVID database at https://david.ncifcrf.gov/ for GO (Gene Ontology) enrichment analysis and KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway analysis, with Homo sapiens selected as the species. Visualizations were conducted using the Weishengxin platform at http://www.bioinformatics.com.cn/ . 

The Cytoscape software was used to construct and analyze the component-target-pathway diagram. Nodes represented chemical components, core targets, and pathways, while edges represented the interaction relationships between nodes. 

After the LQAtta treatment, mice were anesthetized with 3% pentobarbital, their whiskers were trimmed, and the eyeballs were removed. Blood samples were drawn into tubes that included a clotting agent, and then subjected to centrifugation at 3000 rpm for 15 minutes at ambient temperature. Following this, the separated serum layer was meticulously isolated and subsequently preserved at a temperature of −80°C, ensuring its availability for upcoming analytical procedures. Following blood collection, mice underwent euthanasia through cervical dislocation. The liver was then visually inspected for any gross morphological changes before being excised and weighed. For histological evaluation, a liver lobe segment was fixed in 4% paraformaldehyde solution overnight, followed by preparation for embedding and subsequent sectioning. The residual liver tissue was immediately transferred to cryotubes and subsequently immersed in liquid nitrogen, ensuring preservation for forthcoming experimental procedures. The assessment of liver functionality and lipid profiles within the bloodstream utilized a state-of-the-art fully automated biochemical analyzer. The assessments done in this analysis involved some parameters that are relevant to liver function such as alanine aminotransferase (ALT) and aspartate aminotransferase (AST). Moreover, the assessment of lipid profile focused on the measurement of Total Cholesterol (CHO). 

Histopathological evaluation of liver tissue: The histological examination of different structures and in particular the presence of lipids in the liver sections of mice was done using both the HE staining procedure and Oil Red O staining methods. Also, the degree of fibrosis was assessed from the Sirius Red staining of these sections. 

Evaluation of immune cell infiltration: To evaluate the extent of infiltration by macrophages and CD4 and CD8 T cells in mouse liver tissue, sections were subjected to immunohistochemical analysis using antibodies specific for F4/80, CD4, and CD8 markers. In addition, immunohistochemistry of p-NF-κB p65 and NF-κB p65 was also performed. This method allowed for a detailed assessment of immune cell presence within the hepatic environment. 

Detailed quantitative evaluations were conducted to accurately measure the levels of specific proinflammatory cytokines, which include IL-1β, IL-6, and TNF-α, present in samples of liver tissue. Total RNA was extracted from liver samples using TRIzol reagent (GlpBio Technology, GK20008-100). Reverse transcription was then performed using HiScript ® II Q RT SuperMix (Vazyme Biotech, R223-01) according to the manufacturer’s instructions. The PCR amplification products were quantified using a real-time PCR system (LightCycler480 Instrument II) in conjunction with SYBR Green reagent (Vazyme Biotech, Q711-02). The mRNA expression levels of target genes were normalized to that of β-actin using the comparative CT (2 −ΔΔCt ) method. The primer sequences for mice are listed in . 

Liver tissue extracts were lysed using Radioimmunoprecipitation (RIPA) buffer containing a protease inhibitor cocktail (GlpBio Technology, GK10014) and a phosphatase inhibitor cocktail (GlpBio Technology, GK10012). For Western blot analysis, equal amounts of protein were subjected to Sodium Dodecyl Sulfate-Polyacrylamide Gel Electrophoresis (SDS-PAGE) and subsequently electrotransferred onto PVDF membranes (Millipore). The membranes were incubated in 5% skimmed milk or 3% bovine serum albumin before being blotted with specific primary antibodies. Following incubation with horseradish peroxidase (HRP)-conjugated secondary antibodies, the membranes were detected using a chemiluminescent Western blot detection system (Bio-Rad Laboratories, CA, USA). Density measurements were performed using ImageJ software (Fujifilm, Tokyo, Japan). Detection of NF-κB Pathway Indicators: The technique of Western blotting was utilized to assess the levels of p-NF-κB p65 and NF-κB p65 in liver tissues. 

Analysis of LQAtta Granule Composition and Blood Entry Composition After gavage administration of LQAtta to HFHC mice, their serum was collected as drug-containing serum, while the serum of HFHC mice without drug administration served as control serum. Both drug-containing serum and control serum underwent non-targeted metabolome sequencing . The metabolites obtained from both groups were intersected to identify common metabolites . Subsequently, the common metabolites in the drug-containing serum group were excluded, leaving 260 unique metabolites in the drug-containing serum group. Further comparison of these 260 unique metabolites in the drug-containing serum group with the 1518 secondary metabolites of the LQAtta granule identified a total of 106 blood-entry components of LQAtta . Network Pharmacology Analysis Based on the TCMSP and BATMAN databases, 388 chemical component targets were obtained; after searching and deduplication from the Genecards and OMIM databases, a total of 4011 potential targets were identified. By intersecting the chemical component targets with the disease targets, 160 common targets were obtained, indicating that these targets may be the potential therapeutic targets of LQAtta . Subsequently, we constructed a Protein-Protein Interaction (PPI) network to depict the intricate relationships among different targets. We identified 20 core target signals . GO enrichment analysis determined the biological processes associated with the hepatoprotective effects of LQAtta, mainly involving responses to oxidative stress, apoptosis, and inflammation . KEGG enrichment analysis suggested that LQAtta may alleviate NASH by regulating pathways such as the Toll-like receptor signaling pathway, the NF-κB signaling pathway, and inflammation-related pathways . Finally, the Cytoscape software was utilized to create a component-target-pathway network diagram . Improvement of Body Weight and Fat Accumulation in HFHC-Induced NASH Mice by LQAtta To evaluate the impact of LQAtta on NASH, HFHC-induced NASH mice were employed in this study. C57 BL/6J mice were fed with an HFHC diet for 8 weeks. Subsequently, the treatment group received HFHC+LQAtta for 8 and 12 weeks, while the NASH group continued to be fed with HFHC for 8 and 12 weeks consecutively . The results revealed differences in the weight gain curves among the three groups. From the 16th to the 20th week post-treatment, HFHC-fed NASH mice exhibited significantly increased body weights compared to those in the normal diet group. Furthermore, the LQAtta group exhibited a marked reduction in body weight from the 16th to the 20th week of treatment, compared to the HFHC group . Additionally, gross morphological examination of the liver revealed that the livers of NASH group mice were significantly enlarged, yellowish in color, with a slightly tough texture, blunt edges, and a greasy appearance, accompanied by a significant increase in liver weight. In contrast, the livers of mice in the HFHC+LQAtta group were smaller in size, with improved coloration and softer texture, compared to those in the NASH group, and the liver weight was reduced ( and ). LQAtta Alleviates Hepatic Steatosis and Improves Lipid Metabolism in NASH Mice To evaluate the therapeutic efficacy of LQAtta against HFHC-induced liver injury, serum ALT and AST levels were measured. The results demonstrated a significant reduction in serum ALT levels following LQAtta administration, whereas serum AST levels showed no significant difference from the NASH group at week 20 . To assess the impact of LQAtta on lipid metabolism in NASH mice, serum lipid levels were examined. HFHC feeding notably elevated serum CHO levels, which were subsequently reduced by LQAtta treatment. Notably, TG levels did not follow the conventional trend of elevation in the NASH group and subsequent reduction in the treated group as reported in previous literature . To further evaluate the effects of LQAtta on hepatic steatosis and lipid accumulation in NASH mice, H&E staining was employed to assess steatosis, Oil Red O staining was used to quantify hepatic lipid droplet accumulation, and Sirius Red staining was applied to evaluate liver collagen fiber content. From weeks 16 to 20 post-treatment, H&E staining revealed that LQAtta progressively mitigated liver injury and steatosis in NASH mice . NAS scores of liver H&E images are shown in . Oil Red O staining indicated that LQAtta treatment ameliorated hepatic lipid accumulation . Sirius Red staining demonstrated that liver fibrosis was significantly reduced in the LQAtta-treated group compared to the model group . Collectively, these findings suggest that LQAtta administration alleviates hepatic steatosis and improves lipid metabolism in NASH mice. Potential Regulation of NASH by LQAtta via the NF-κB Pathway To evaluate the protein-level modulation of NASH by LQAtta, validation was performed through Western blotting ( and ). The results demonstrated that the p-NF-κB p65 protein levels in the livers of mice in the NASH group were significantly higher than those in the control group (P < 0.05). Conversely, the expression levels of p-NF-κB p65 protein in the LQAtta group were notably lower than those in the NASH group. To further assess the mRNA-level regulation of NASH by LQAtta, RT‒qPCR analysis revealed  that compared to the control group, the mRNA expression levels of inflammatory factors (TNF-α, IL-1β, IL-6) and NF-κB in the livers of mice in the model group were significantly upregulated. After 20 weeks of intervention with LQAtta, the mRNA expression of TNF-α, IL-1β, IL-6, and NF-κB were all downregulated. In summary, LQAtta may regulate NASH through the NF-κB pathway. Improvement of Immunohistochemical Levels in HFHC-Induced NASH Mice by LQAtta To evaluate the infiltration of macrophages and CD4+ and CD8+ T cells in mouse liver tissues, immunohistochemical analysis was conducted on tissue sections using specific antibodies against F4/80, CD4, and CD8 markers. The F4/80 immunohistochemical staining  showed that compared to control mice, there was a significant increase in macrophage infiltration in the HFHC diet-induced model group, while intervention with LQAtta reduced macrophage infiltration in mice fed the HFHC diet. and present the immunohistochemical staining for CD4 and CD8, respectively, revealing that compared to control mice, there was a marked increase in immune cell infiltration in the NASH group, which was mitigated by LQAtta intervention. Nuclear immunohistochemical staining  demonstrated that the p-NF-κB p65 protein level in the NASH group was significantly higher than that in the control group. Furthermore, the expression of p-NF-κB p65 protein in the LQAtta group was notably lower than that in the NASH group. 

After gavage administration of LQAtta to HFHC mice, their serum was collected as drug-containing serum, while the serum of HFHC mice without drug administration served as control serum. Both drug-containing serum and control serum underwent non-targeted metabolome sequencing . The metabolites obtained from both groups were intersected to identify common metabolites . Subsequently, the common metabolites in the drug-containing serum group were excluded, leaving 260 unique metabolites in the drug-containing serum group. Further comparison of these 260 unique metabolites in the drug-containing serum group with the 1518 secondary metabolites of the LQAtta granule identified a total of 106 blood-entry components of LQAtta . 

Based on the TCMSP and BATMAN databases, 388 chemical component targets were obtained; after searching and deduplication from the Genecards and OMIM databases, a total of 4011 potential targets were identified. By intersecting the chemical component targets with the disease targets, 160 common targets were obtained, indicating that these targets may be the potential therapeutic targets of LQAtta . Subsequently, we constructed a Protein-Protein Interaction (PPI) network to depict the intricate relationships among different targets. We identified 20 core target signals . GO enrichment analysis determined the biological processes associated with the hepatoprotective effects of LQAtta, mainly involving responses to oxidative stress, apoptosis, and inflammation . KEGG enrichment analysis suggested that LQAtta may alleviate NASH by regulating pathways such as the Toll-like receptor signaling pathway, the NF-κB signaling pathway, and inflammation-related pathways . Finally, the Cytoscape software was utilized to create a component-target-pathway network diagram . 

To evaluate the impact of LQAtta on NASH, HFHC-induced NASH mice were employed in this study. C57 BL/6J mice were fed with an HFHC diet for 8 weeks. Subsequently, the treatment group received HFHC+LQAtta for 8 and 12 weeks, while the NASH group continued to be fed with HFHC for 8 and 12 weeks consecutively . The results revealed differences in the weight gain curves among the three groups. From the 16th to the 20th week post-treatment, HFHC-fed NASH mice exhibited significantly increased body weights compared to those in the normal diet group. Furthermore, the LQAtta group exhibited a marked reduction in body weight from the 16th to the 20th week of treatment, compared to the HFHC group . Additionally, gross morphological examination of the liver revealed that the livers of NASH group mice were significantly enlarged, yellowish in color, with a slightly tough texture, blunt edges, and a greasy appearance, accompanied by a significant increase in liver weight. In contrast, the livers of mice in the HFHC+LQAtta group were smaller in size, with improved coloration and softer texture, compared to those in the NASH group, and the liver weight was reduced ( and ). 

To evaluate the therapeutic efficacy of LQAtta against HFHC-induced liver injury, serum ALT and AST levels were measured. The results demonstrated a significant reduction in serum ALT levels following LQAtta administration, whereas serum AST levels showed no significant difference from the NASH group at week 20 . To assess the impact of LQAtta on lipid metabolism in NASH mice, serum lipid levels were examined. HFHC feeding notably elevated serum CHO levels, which were subsequently reduced by LQAtta treatment. Notably, TG levels did not follow the conventional trend of elevation in the NASH group and subsequent reduction in the treated group as reported in previous literature . To further evaluate the effects of LQAtta on hepatic steatosis and lipid accumulation in NASH mice, H&E staining was employed to assess steatosis, Oil Red O staining was used to quantify hepatic lipid droplet accumulation, and Sirius Red staining was applied to evaluate liver collagen fiber content. From weeks 16 to 20 post-treatment, H&E staining revealed that LQAtta progressively mitigated liver injury and steatosis in NASH mice . NAS scores of liver H&E images are shown in . Oil Red O staining indicated that LQAtta treatment ameliorated hepatic lipid accumulation . Sirius Red staining demonstrated that liver fibrosis was significantly reduced in the LQAtta-treated group compared to the model group . Collectively, these findings suggest that LQAtta administration alleviates hepatic steatosis and improves lipid metabolism in NASH mice. 

To evaluate the protein-level modulation of NASH by LQAtta, validation was performed through Western blotting ( and ). The results demonstrated that the p-NF-κB p65 protein levels in the livers of mice in the NASH group were significantly higher than those in the control group (P < 0.05). Conversely, the expression levels of p-NF-κB p65 protein in the LQAtta group were notably lower than those in the NASH group. To further assess the mRNA-level regulation of NASH by LQAtta, RT‒qPCR analysis revealed  that compared to the control group, the mRNA expression levels of inflammatory factors (TNF-α, IL-1β, IL-6) and NF-κB in the livers of mice in the model group were significantly upregulated. After 20 weeks of intervention with LQAtta, the mRNA expression of TNF-α, IL-1β, IL-6, and NF-κB were all downregulated. In summary, LQAtta may regulate NASH through the NF-κB pathway. 

To evaluate the infiltration of macrophages and CD4+ and CD8+ T cells in mouse liver tissues, immunohistochemical analysis was conducted on tissue sections using specific antibodies against F4/80, CD4, and CD8 markers. The F4/80 immunohistochemical staining  showed that compared to control mice, there was a significant increase in macrophage infiltration in the HFHC diet-induced model group, while intervention with LQAtta reduced macrophage infiltration in mice fed the HFHC diet. and present the immunohistochemical staining for CD4 and CD8, respectively, revealing that compared to control mice, there was a marked increase in immune cell infiltration in the NASH group, which was mitigated by LQAtta intervention. Nuclear immunohistochemical staining  demonstrated that the p-NF-κB p65 protein level in the NASH group was significantly higher than that in the control group. Furthermore, the expression of p-NF-κB p65 protein in the LQAtta group was notably lower than that in the NASH group. 

Over the past four decades, approximately 25% of adults worldwide have been diagnosed with NAFLD, a condition that has emerged as a primary contributor to liver cirrhosis and hepatocellular carcinoma. The incidence of this disease continues to rise annually. , NASH, a variant of NAFLD, is marked by necrotic inflammatory processes and rapid fibrosis development. , With the advancement of NAFLD, NASH may lead to the onset and exacerbation of hepatic fibrosis and cirrhosis. This progression highlights the urgent necessity for specific therapeutic strategies to efficiently manage NAFLD. Currently, there are no specific treatments available, and the clinical management of weight and fat reduction primarily involves dietary modifications along with increased physical activity. Nevertheless, to achieve a more comprehensive approach to treatment, the use of pharmacological agents is often necessary. The quest for the development of safe and effective drugs that can postpone the progression of diseases has garnered significant interest in this field. Studies have consistently shown that a variety of herbal treatments improve liver function in diseases such as NAFLD and NASH. Botanical formulations have been demonstrated to effectively diminish lobular inflammation, fibrosis and reduce hepatic steatosis, and display strong antioxidant, anti-lipogenic properties, anti-apoptotic, and anti-inflammatory. For instance, a traditional Chinese herb called 919 syrup has been reported in the literature to effectively improve liver function in patients with non-alcoholic fatty liver disease (NAFLD) by inhibiting inflammatory response and fat accumulation in the liver Research unveiled the classic prescription of Kangxian ruangan capsule, which alleviated inflammatory responses, histopathological changes, and liver fibrosis in NAFLD fibrotic rats. Another study revealed Cordycepin, a natural product with potent antioxidant and anti-inflammatory effects, that exerts significant protective effects against hepatic steatosis, inflammation, liver injury, and fibrosis in mice under metabolic stress through activation of the AMPK signaling pathway. There’s another piece of literature found that the water extract of Curcuma longa L. may ameliorate NAFLD by modulating fatty acid uptake. Study demonstrated that Huanglian-Hongqu herb ameliorates NAFLD by targeting the PPAR signaling pathway. These plant-based treatments work by mitigating inflammatory processes in the liver, decreasing the accumulation of fat within liver cells, and preventing the formation of fibrous tissue. They provide significant antioxidant protection, reduce inflammation, inhibit cell death, and prevent lipid synthesis within the liver. Previous research , has shown that LQAtta offers substantial therapeutic advantages in treating liver cirrhosis and fibrosis. The NASH model induced by an HFHC diet is both widely adopted and reproducible, demonstrating histopathological features in mice that closely resemble those observed in human NASH as reported in the source. Nonetheless, the variability observed in the extent of steatosis, inflammation, and fibrosis presented by this model, coupled with its time-intensive nature, underscores the challenges of experimental consistency as noted in references. , The research conducted in this investigation has demonstrated a marked elevation in the serum concentrations of ALT, AST, and CHO in individuals diagnosed with NASH compared to the levels observed in participants belonging to the control group; the mouse livers were significantly enlarged, yellowish, slightly tough in texture, with blunt edges, and a greasy feel; and their histopathology showed steatosis, increased inflammation, and significantly increased infiltration of macrophages and immune cells. These findings indicate that the model group was successfully established. Gross morphological changes in the liver are related to liver function. Significant liver enlargement, yellowing, hepatocyte swelling, and balloon degeneration were observed in mice in the NASH model group. The histopathological changes induced by the HFHC diet in mice were reduced after LQAtta treatment. Findings from this investigation indicate that LQAtta exerts a hepatoprotective influence. LQAtta exerts its effects by soothing the liver. Metabolic syndrome, often identified by dyslipidemia, has a known association with NASH as evidenced by. In this study, evaluations of liver function parameters alongside serum total cholesterol (CHO) demonstrated significant elevations in NASH-affected mice when compared with controls. Administration of LQAtta notably decreased serum CHO, AST, and ALT in liver tissue. Although no substantial differences in serum CHO were noted in the LQAtta group at the 16-week mark, significant reductions were observed after 20 weeks of treatment. The possible reason is that LQAtta, as a TCM compound preparation, has a slow onset, and the 16-week administration period was relatively short, not reaching the level of blood lipid-lowering treatment. This study suggests that the administration period of LQAtta may be 3 months. Because n of this study is less than 5, the results of this study are preliminary results and no statistical analysis has been conducted. In the future, the sample size will be further increased for research. From the UHPLC-MS/MS analysis of LQAtta, a total of 1,518 chemical components were identified. These included 159 flavonoids, 92 terpenoids, 57 phenylpropanoids, 51 alkaloids, 46 compounds belonging to ketones, aldehydes, and acids, 38 phenols, 25 steroids, 21 amino acids, and 18 organic acids. Network pharmacology serves as a comprehensive analytical tool that enables a systematic understanding of the therapeutic mechanisms of multi-component drugs. In this study, based on GO and KEGG enrichment analyses, multiple pathways closely related to the pathological processes of NASH were identified, such as the Toll-like receptor signaling pathway, the NF-κB signaling pathway, and inflammation-related pathways. Therefore, we speculate that the improvement effect of LQAtta on NASH may be closely related to its potent anti-inflammatory and antioxidant activities. Further experimental validation is required to elucidate its underlying mechanisms. Studies have indicated that NF-κB consists of a heterodimer formed by p50 and p65 subunits. Typically, NF-κB is associated with its inhibitor, IκB, creating an inactive trimer located within the cytoplasm. Enhanced levels of phosphorylated p65 in NF-κB were detected in the hepatic tissues of NASH-affected mice via Western blot, as opposed to their healthy counterparts. Nonetheless, administration of LQAtta led to decreased levels of these proteins. Considering the pivotal involvement of the NF-κB pathway in the advancement of NASH, these observations suggest that LQAtta may effectively counteract disease progression in mice through the suppression of this signaling pathway. Liver inflammation is considered to be a major factor in the onset of NASH. Cytokines are essential biomarkers of inflammation in NASH and this is why their levels are of importance. In particular, TNF-α is a key cytokine involved in the development of NASH due to its strong relationship with the inflammatory processes modulated by the NF-κB pathway. In this work, results show that TNF-α, IL-6, and IL-1β were significantly elevated in the liver tissue of patients with NASH as compared to the control group. After the administration of LQAtta, these cytokines were decreased to a certain extent. Thus, it may be concluded that LQAtta exerts anti-inflammatory effects through modulating the NF-κB activity and may have the potential for use in treating inflammation diseases. In summary, based on the results of this study, it can be concluded that the NF-κB pathway may serve as a potential target for LQAtta in regulating the NASH animal model. Through metabolomics and network pharmacological screening, we have identified that LQAtta exerts its effects through multiple targets and pathways. Therefore, this study represents a preliminary experimental investigation, and further research is needed to explore other targets and clinical applications of LQAtta. 

