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README.md
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path: data/test-*
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This is the PMC Articles Dataset used to train Panacea.
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path: data/test-*
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This is the Panancea PMC Articles Dataset, a dataset consisting of medical literature sampled from PubMed Central, covering different medical specialties, used to train Panacea, our medical LLM finetune.
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# Dataset Size
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| Metric | Size |
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|----------------|-------------|
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| # of Entries | 35,446 |
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| # of Words | 250.6M |
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| Storage Size | 1.68 GB |
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# Dataset Composition
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Our dataset is composed of articles from these specialties. We query them from PubMed Central using Medical Subject Headings (MeSH), a controlled vocabulary thesaurus for expanding article searches in PubMed Central.
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| Category | Count | Percentage (%) |
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|--------------------------------|-------|----------------|
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| Anatomy | 4555 | 12.85 |
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| Surgery | 4381 | 12.36 |
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| Family Medicine | 3853 | 10.87 |
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| Medicine | 3748 | 10.57 |
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| Microbiology | 2806 | 7.92 |
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| Pathology | 2397 | 6.76 |
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| Dentistry | 2261 | 6.38 |
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| Biochemistry | 2010 | 5.67 |
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| Pediatrics | 1628 | 4.59 |
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| Pharmacology | 1601 | 4.52 |
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| Physiology | 1273 | 3.59 |
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| Ophthalmology | 1156 | 3.26 |
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| Social and Preventive Medicine| 1030 | 2.91 |
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| Forensic Medicine | 1023 | 2.89 |
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| Gynaecology | 812 | 2.29 |
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| ENT | 490 | 1.38 |
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| Psychiatry | 419 | 1.18 |
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| Radiology | 3 | 0.01 |
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| **Total** | 35446 | 100 |
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# Dataset Preprocessing
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- We have only briefly cleaned the datasets, by excluding figures, captions, references, front and end materials from the returned XML file, storing the results as .txt files.
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- Some Regex filtering is done to take away special characters and Latex symbols.
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