Results of RACE amplifications using MPSS signatures


Best match (nucleotide BLAST) % id # MPSS signature tpm N tpm P bp Best match (translated BLAST) E val Accession # of match Lingulodinium polyedrum luciferin-binding protein mRNA A. tamarense EST UI-D-GC1-aaq-b-08-0-UI 95 CK782963 42 GATCACCTACCGTCCGG 50667 62195 317 ND a 49 GATCAGACCCCCTGCGA 9609 10532 253 Same as previous signature 22 GATCACCTACCGACCGG 199 3360 325 Same as previous signature 15 GATCACCTACCGACCGT 0 274 315 Same as previous signature A. tamarense EST UI-D-GC1-aap-d-10-0-UI 94 CV554063 34 GATCCATGCGGTCTTTG 42044 81751 106 Lingulodinium polyedrum histone-like protein mRNA 3e-34 AF482694 11 GATCCATGCGGTCTTCG 0 464 109 Same as previous signature 12 GATCCATGCGGTATTTG 0 373 109 Same as previous signature 17 GATCCATGCGCTCTTTG 0 260 108 Same as previous signature Alexandrium fundyense S-adenosyl-homocysteine hydrolase like protein mRNA A. tamarense EST UI-D-GC0-aae-p-02-0-UI 

a not determined because a match was made via nucleotide search b translated blast match was made to the best matching EST, not to the RACE product itself.
Results of RACE amplifications using MPSS signatures