---
license: apache-2.0
pretty_name: >-
  Small sample dataset for whole-bacterial genomes clustering (Protein
  sequences)
tags:
- biology
- bacteria
- prokaryotes
- protein
- bacformer
- clusterings
- strain
size_categories:
- n<1K
---

# Small sample dataset for whole-bacterial genomes clustering (protein sequences)

A small sample dataset for testing strain clustering by embedding protein sequences.

The genome protein sequences have been extracted from [MGnify](https://www.ebi.ac.uk/metagenomics). Each row contains a set of contigs with protein sequences present in the genome. 
Each contig is a list of proteins ordered by their location on the chromosome or plasmid.

## Usage

See the [Bacformer strain clustering tutorial](https://github.com/macwiatrak/Bacformer/blob/main/tutorials/strain_clustering_tutorial.ipynb) for an example on how to use the dataset.