As much as one fifth of Yangming Shan National Park consists of privately owned land, and much of the Yu Shan and Taroko parks falls under the jurisdiction of the Forestry Bureau and National Taiwan University.
再以玉山入山證為例，甲種入山證至今仍由警務處統一核發，公園法雖規定進入國家公園的入山證，應經國家公園的同意，但一在水里、一在台北，事權一直不統一，加上許多人有「為什麼過去可以來，成立國家公園就有限制了」的疑惑，造成管理困難。