Datasets:
File size: 966 Bytes
0f72087 36fe9db c31bdc3 0f72087 c8df808 0f72087 |
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---
language:
- en
tags:
- protein sequences
- biology
- bioinformatics
task_categories:
- text-generation
---
The dataset was extracted from antismash-db 4.0 postgresql dump, the corresponding description can be found here:
https://antismash-db.secondarymetabolites.org/
If you want to use it, please refer to the original licensing terms and properly cite the authors.
Each line in .csv file corresponds to NRPS module, both with the monomer produced by it.
Each module has a specific sequence of domains. Module possible structure is described in the literature.
To clean the data, I referred to wiki definitions
https://en.wikipedia.org/wiki/Nonribosomal_peptide#Modules
Each line has the corresponding columns, if the column contains protein sequence, it means that module has the corresponding domain.
The monomers are cleaned to keep only aminoacid monomers and corresponding D-aminoacids
(it should be defined by the presence of Epimerization domain). |