              (fn[snm]
                (let [job (assoc-in phase1-job-template [:nodes :ph1 :args]
                                    (get-phase-1-args
-                                    exp eid snm :repk repk :bowtie bt))
+                                    exp eid snm :repk repk
+                                    :bowtie bt :star star))
                      cfg (-> job
                              (pg/config-pgm-graph-nodes get-toolinfo nil nil)
                              pg/config-pgm-graph)]

  get-comparison-files
  (fn[exptype & args] exptype))

;;;(ns-unmap 'aerobio.htseq.common 'run-phase-2)
(defmulti
  ^{:doc "Each experiment type has its own phase 2 driver, and this

        bt (if (-> template (get-in [:nodes :ph1 :name])
                   (cljstr/includes? "bowtie1"))
             :bt1 :bt2)
        star (-> template (get-in [:nodes :ph1 :name])
                 (cljstr/includes? "star"))
        sample-names (get-exp-info eid :sample-names)
        sample-names (if repk
                       (mapcat #((get-exp-info eid :replicate-names) %)
