             (run-phase-1 eid recipient get-toolinfo template :repk rep))
 
           (#{"phase-2" "phase-2b"} phase)
-          (run-phase-2 exp eid recipient get-toolinfo template)))
+          (run-phase-2 exp eid recipient get-toolinfo template)
+
+          (#{"phase-2-rnaseq" "phase-2-term-seq"
+             "phase-2-5NTap"  "phase-2-5PTap"} phase)
+          (run-phase-2 exp eid recipient get-toolinfo template phase)))
 
       (#{"compare"} action) :HOW??
 

                             (map #(fs/join base %)))]
    (into {}
          (map (fn[exp-dir ibc]
                 [ibc (get-exp-file-specs
                       eid exp-illumina-xref exp-dir ibc ftype)])
               exp-sample-dirs
               ibcs))))


       (coll/drop-until #(= (first %) "Sample_ID"))
       rest))

(defn term-seq-adjust
  [secmap]
  (let [run-xref (->> secmap :run-xref (mapv #(coll/takev 3 %))
                      (mapv (fn[[_ rt bc]]
                              [bc [(keyword (cljstr/lower-case rt)) rt]]))
                      (into {}))
        bc-xref (->> secmap :bc-xref
                     (mapv (fn[[n nm ibc sbc]]
                             (let [rtnm (second (get run-xref ibc [:na ""]))
                                   [strain cond lib] (str/split #"-" nm)]
                               [n (cljstr/join "-" [strain (str rtnm cond) lib])
                                ibc sbc]))))]
    (assoc secmap :run-xref run-xref :bc-xref bc-xref)))

(defn get-exp-sample-info [csv]
  (let [recs (->> csv slurp csv/read-csv)
        x (coll/dropv-until
