   :url "https://genome-cancer.ucsc.edu"
   :license {:name "Apache License Version 2.0"
             :url "http://www.eclipse.org/legal/epl-v10.html"}
+  :repl-options  {
+                  ;; If nREPL takes too long to load it may timeout,
+                  ;; increase this to wait longer before timing out.
+                  ;; Defaults to 30000 (30 seconds)
+                  :timeout 12000000
+                  }
   :profiles {:dev {:dependencies
                    [[org.jumpmind.symmetric.schemaspy/schemaspy "5.0.0"]]}
              :uberjar {:omit-source true :aot [mikera.vectorz.core]}}

                 [com.h2database/h2 "1.3.175"]
                 [filevents "0.1.0"]
                 [clj-http "0.9.1"]
                 [org.clojure/core.cache  "0.6.3"]
                 [ch.qos.logback/logback-classic  "1.1.1"]
                 [org.clojure/tools.logging  "0.3.0"]
                 [org.clojure/test.check  "0.5.9"]
                 [com.google.code.gson/gson  "2.2.4"]
                 [less-awful-ssl  "1.0.0"]
                 [org.clojure/core.match "0.3.0-alpha4"]
                 [org.clojure/math.combinatorics "0.1.1"]
                 [com.taoensso/timbre  "3.2.0"]]
  :java-source-paths ["src-java"]
  :target-path  "target/%s"
  :clean-targets [:target-path :compile-path "build"]
  :aliases {"uberdoc" ["do" ["alldocs"] ["clientsrc"] ["docinstall"] ["uberwrap"]]
            ; XXX this is a bit raw

  :javac-options ["-target" "1.6" "-source" "1.6"]
  :aot [cavm.core cavm.h2-binary cavm.h2-unpack-rows cavm.conn-customizer]
  :global-vars {*warn-on-reflection* true}
  :plugins [[lein-sphinx "1.0.1"]
            [codox "0.8.10"]
            [lein-shell "0.4.0"]
            [lein-hiera "0.8.0"]]
  :sphinx {:setting-values {:version ~version
                            :project ~(str "UCSC Xena Server " version)}}
  :codox {:output-dir "doc/_build/implementation"}
  :hiera {:ignore-ns #{cavm.h2-query}
          :cluster-depth 1
