  Recent advances in biological technologies, such as multi-way chromosome
conformation capture (3C), require development of methods for analysis of
multi-way interactions. Hypergraphs are mathematically tractable objects that
can be utilized to precisely represent and analyze multi-way interactions. Here
we present the Hypergraph Analysis Toolbox (HAT), a software package for
visualization and analysis of multi-way interactions in complex systems.

Quantitative Methods