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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 6 new columns ({'Kcat/Km', 'Enzyme', 'Km', 'Kcat', 'Commentary[Cosubstrate]', 'Substrate'}) and 11 missing columns ({'km', 'Unit_Kobs', 'Ribozyme', 'Source', 'Km_kcat', 'Unit_Kcleav', 'Kcleav', 'kcat', 'Commentary[Others]', 'Variable_reactant', 'Kobs'}).
This happened while the csv dataset builder was generating data using
hf://datasets/jackkuo/LLM-Enzyme-Kinetics-Archive-LLENKA/3435_merged_data_claude3.5_hu.csv (at revision 76d4700bfb6a5b338e79e0341eae13e819150698)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
Enzyme: string
Organism: string
Substrate: string
Km: string
Unit_Km: string
Kcat: string
Unit_Kcat: string
Kcat/Km: string
Unit_Kcat/Km: string
Commentary[Temp]: string
Commentary[pH]: string
Commentary[Mutant]: string
Commentary[Cosubstrate]: string
pubmed_id: int64
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1948
to
{'Ribozyme': Value(dtype='string', id=None), 'Organism': Value(dtype='string', id=None), 'Variable_reactant': Value(dtype='string', id=None), 'Kobs': Value(dtype='float64', id=None), 'Unit_Kobs': Value(dtype='string', id=None), 'km': Value(dtype='float64', id=None), 'Unit_Km': Value(dtype='string', id=None), 'kcat': Value(dtype='float64', id=None), 'Unit_Kcat': Value(dtype='string', id=None), 'Unit_Kcat/Km': Value(dtype='string', id=None), 'Kcleav': Value(dtype='float64', id=None), 'Unit_Kcleav': Value(dtype='string', id=None), 'Commentary[Temp]': Value(dtype='string', id=None), 'Commentary[pH]': Value(dtype='string', id=None), 'Commentary[Mutant]': Value(dtype='string', id=None), 'Commentary[Others]': Value(dtype='string', id=None), 'pubmed_id': Value(dtype='string', id=None), 'Source': Value(dtype='string', id=None), 'Km_kcat': Value(dtype='float64', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1438, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1050, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 6 new columns ({'Kcat/Km', 'Enzyme', 'Km', 'Kcat', 'Commentary[Cosubstrate]', 'Substrate'}) and 11 missing columns ({'km', 'Unit_Kobs', 'Ribozyme', 'Source', 'Km_kcat', 'Unit_Kcleav', 'Kcleav', 'kcat', 'Commentary[Others]', 'Variable_reactant', 'Kobs'}).
This happened while the csv dataset builder was generating data using
hf://datasets/jackkuo/LLM-Enzyme-Kinetics-Archive-LLENKA/3435_merged_data_claude3.5_hu.csv (at revision 76d4700bfb6a5b338e79e0341eae13e819150698)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
Ribozyme
string | Organism
null | Variable_reactant
string | Kobs
null | Unit_Kobs
null | km
float64 | Unit_Km
string | kcat
float64 | Unit_Kcat
string | Unit_Kcat/Km
string | Kcleav
null | Unit_Kcleav
null | Commentary[Temp]
string | Commentary[pH]
string | Commentary[Mutant]
string | Commentary[Others]
string | pubmed_id
string | Source
string | Km_kcat
float64 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Hammerhead
| null |
S13
| null | null | 0.000038 |
mM
| 0.006667 |
s^-1
|
mM^-1s^-1
| null | null |
30°C
|
8
|
WT
|
10 mM MgCl2
|
1280808
|
Table
| 166.666667 |
Hammerhead
| null |
S13
| null | null | 0.000059 |
mM
| 0.148333 |
s^-1
|
mM^-1s^-1
| null | null |
30°C
|
8
|
DNA-armed
|
10 mM MgCl2
|
1280808
|
Table
| 2,500 |
rz.GH
| null |
rGAG
| null | null | 0.000038 |
mM
| 0.000317 |
s^-1
| null | null | null |
55°C
|
8.5
|
WT
| null |
1408757
|
Table
| null |
rz.GH
| null |
dGAGrUCA
| null | null | 0.000056 |
mM
| 0.00145 |
s^-1
| null | null | null |
55°C
|
8.5
|
WT
| null |
1408757
|
Table
| null |
rz.DRD
| null |
rGAG
| null | null | 0.000064 |
mM
| 0.000317 |
s^-1
| null | null | null |
55°C
|
8.5
|
DNA in base-pairing sequences and stem-loop II
| null |
1408757
|
Table
| null |
rz.DRD
| null |
dGAGrUCA
| null | null | 0.000196 |
mM
| 0.0004 |
s^-1
| null | null | null |
55°C
|
8.5
|
DNA in base-pairing sequences and stem-loop II
| null |
1408757
|
Table
| null |
rz.DRD
| null |
dGAGrUCA
| null | null | 0.000048 |
mM
| 0.0002 |
s^-1
| null | null | null |
50°C
|
8.5
|
DNA in base-pairing sequences and stem-loop II
| null |
1408757
|
Table
| null |
rz.RLoop
| null |
rGAG
| null | null | 0.000064 |
mM
| 0.0021 |
s^-1
| null | null | null |
55°C
|
8.5
|
DNA in base-pairing sequences only
| null |
1408757
|
Table
| null |
rz.RLoop
| null |
dGAGrUCA
| null | null | 0.000091 |
mM
| 0.0018 |
s^-1
| null | null | null |
55°C
|
8.5
|
DNA in base-pairing sequences only
| null |
1408757
|
Table
| null |
rz.GH
| null |
rGAG
| null | null | null | null | 0.000333 |
s^-1
| null | null | null |
55°C
|
8.5
|
WT
| null |
1408757
|
Text
| null |
RZ1
| null |
α-lac mRNA
| null | null | 0.00017 |
mM
| 0.3 |
mol/min
|
mM^-1s^-1
| null | null |
37°C
|
8
|
WT
|
20 mM MgCl2
|
1425576
|
Table
| 30 |
RZ2
| null |
α-lac mRNA
| null | null | 0.00027 |
mM
| 0.4 |
mol/min
|
mM^-1s^-1
| null | null |
37°C
|
8
|
WT
|
20 mM MgCl2
|
1425576
|
Table
| 25 |
RZ3
| null |
α-lac mRNA
| null | null | 0.00062 |
mM
| 1.1 |
mol/min
|
mM^-1s^-1
| null | null |
37°C
|
8
|
WT
|
20 mM MgCl2
|
1425576
|
Table
| 30 |
RZ4a
| null |
α-lac mRNA
| null | null | 0.00028 |
mM
| 0.3 |
mol/min
|
mM^-1s^-1
| null | null |
37°C
|
8
|
WT
|
20 mM MgCl2
|
1425576
|
Table
| 18.333333 |
RZ4b
| null |
α-lac mRNA
| null | null | 0.00028 |
mM
| 0.5 |
mol/min
|
mM^-1s^-1
| null | null |
37°C
|
8
|
WT
|
20 mM MgCl2
|
1425576
|
Table
| 30 |
RZ5
| null |
α-lac mRNA
| null | null | 0.00041 |
mM
| 1.5 |
mol/min
|
mM^-1s^-1
| null | null |
37°C
|
8
|
WT
|
20 mM MgCl2
|
1425576
|
Table
| 61.666667 |
Hammerhead
| null | null | null | null | 0.00088 |
mM
| 0.015667 |
s^-1
|
mM^-1s^-1
| null | null |
55°C
|
8
|
WT
|
10 mM Mg^2+
|
1570323
|
Table
| 18.333333 |
Hammerhead
| null | null | null | null | 0.0042 |
mM
| 0.000233 |
s^-1
|
mM^-1s^-1
| null | null |
55°C
|
8
|
I^10
|
10 mM Mg^2+
|
1570323
|
Table
| 0.055 |
Hammerhead
| null | null | null | null | 0.0069 |
mM
| 0.000095 |
s^-1
|
mM^-1s^-1
| null | null |
55°C
|
8
|
dG^10
|
10 mM Mg^2+
|
1570323
|
Table
| 0.013667 |
Hammerhead
| null | null | null | null | 0.013 |
mM
| 0.0008 |
s^-1
|
mM^-1s^-1
| null | null |
55°C
|
8
|
dG^13
|
10 mM Mg^2+
|
1570323
|
Table
| 0.058333 |
Hammerhead 6
| null | null | null | null | 0.000046 |
mM
| 0.025 |
s^-1
|
nM^-1·min^-1
| null | null |
25°C
|
7.5
| null |
10 mM MgCl2
|
1689847
|
Table
| 0.032 |
Hammerhead 8
| null | null | null | null | 0.000041 |
mM
| 0.016667 |
s^-1
|
nM^-1·min^-1
| null | null |
25°C
|
7.5
| null |
10 mM MgCl2
|
1689847
|
Table
| 0.024 |
Hammerhead 9
| null | null | null | null | 0.00016 |
mM
| 0.025 |
s^-1
|
nM^-1·min^-1
| null | null |
25°C
|
7.5
| null |
10 mM MgCl2
|
1689847
|
Table
| 0.0093 |
Hammerhead 10
| null | null | null | null | 0.0023 |
mM
| 0.016667 |
s^-1
|
nM^-1·min^-1
| null | null |
25°C
|
7.5
| null |
10 mM MgCl2
|
1689847
|
Table
| 0.00044 |
Hammerhead
| null | null | null | null | 0.000154 |
mM
| 0.0385 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
WT
|
10 mM MgCl2
|
1736306
|
Table
| 250 |
Hammerhead
| null | null | null | null | 0.000041 |
mM
| 0.0001 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-dG10
|
10 mM MgCl2
|
1736306
|
Table
| 1.666667 |
Hammerhead
| null | null | null | null | 0.000308 |
mM
| 0.000667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-FG10
|
10 mM MgCl2
|
1736306
|
Table
| 3.333333 |
Hammerhead
| null | null | null | null | 0.000153 |
mM
| 0.013333 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-NG10
|
10 mM MgCl2
|
1736306
|
Table
| 20 |
Hammerhead
| null | null | null | null | 0.000051 |
mM
| 0.000083 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-dG13
|
10 mM MgCl2
|
1736306
|
Table
| 1.666667 |
Hammerhead
| null | null | null | null | 0.000227 |
mM
| 0.000133 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-FG13
|
10 mM MgCl2
|
1736306
|
Table
| 0.666667 |
Hammerhead
| null | null | null | null | 0.00019 |
mM
| 0.002667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-NG13
|
10 mM MgCl2
|
1736306
|
Table
| 13.333333 |
Hammerhead
| null | null | null | null | 0.000158 |
mM
| 0.054833 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-dG19
|
10 mM MgCl2
|
1736306
|
Table
| 346.666667 |
Hammerhead
| null | null | null | null | 0.000176 |
mM
| 0.046667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-FG19
|
10 mM MgCl2
|
1736306
|
Table
| 265 |
Hammerhead
| null | null | null | null | 0.000095 |
mM
| 0.020167 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-NG19
|
10 mM MgCl2
|
1736306
|
Table
| 211.666667 |
Hammerhead
| null | null | null | null | 0.000087 |
mM
| 0.021667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-dG24
|
10 mM MgCl2
|
1736306
|
Table
| 248.333333 |
Hammerhead
| null | null | null | null | 0.000116 |
mM
| 0.046667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-FG24
|
10 mM MgCl2
|
1736306
|
Table
| 400 |
Hammerhead
| null | null | null | null | 0.000066 |
mM
| 0.013833 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-NG24
|
10 mM MgCl2
|
1736306
|
Table
| 210 |
Hammerhead
| null | null | null | null | 0.000242 |
mM
| 0.079667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-dG27
|
10 mM MgCl2
|
1736306
|
Table
| 330 |
Hammerhead
| null | null | null | null | 0.00021 |
mM
| 0.005 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-FG27
|
10 mM MgCl2
|
1736306
|
Table
| 23.333333 |
Hammerhead
| null | null | null | null | 0.000136 |
mM
| 0.015333 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-NG27
|
10 mM MgCl2
|
1736306
|
Table
| 113.333333 |
NS83
| null |
YOKS501
| null | null | 0.000025 |
mM
| 0.00055 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.6
| null |
12 mM MgCl2, 2 mM spermidine
|
1762907
|
Table
| 22 |
NS80
| null |
YOKS403
| null | null | 0.000023 |
mM
| 0.000133 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.6
| null |
12 mM MgCl2, 2 mM spermidine
|
1762907
|
Table
| 5.5 |
(-)sTRSV
| null | null | null | null | 0.00003 |
mM
| 0.035 |
s^-1
|
mM^-1s^-1
| null | null | null | null |
WT
| null |
1762907
|
Table
| 1,166.666667 |
Hammerhead
| null | null | null | null | 0.00062 |
mM
| 0.008333 |
s^-1
|
mM^-1s^-1
| null | null |
55°C
| null | null | null |
1762907
|
Multisource
| 13.5 |
Hammerhead Ribozyme
| null | null | null | null | 0.00022 |
mM
| 0.683333 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E_unmodified
|
Mn^2+
|
1911762
|
Table
| 3,100 |
Hammerhead Ribozyme
| null | null | null | null | 0.000217 |
mM
| 0.046667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E_unmodified
|
Mg^2+
|
1911762
|
Table
| 216.666667 |
Hammerhead Ribozyme
| null | null | null | null | 0.000276 |
mM
| 0.003333 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-FA_total
|
Mn^2+
|
1911762
|
Table
| 16.666667 |
Hammerhead Ribozyme
| null | null | null | null | 0.000107 |
mM
| 0.011667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-FA_22,28-30
|
Mn^2+
|
1911762
|
Table
| 116.666667 |
Hammerhead Ribozyme
| null | null | null | null | 0.000187 |
mM
| 0.166667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-FA_11,14
|
Mn^2+
|
1911762
|
Table
| 883.333333 |
Hammerhead Ribozyme
| null | null | null | null | 0.000269 |
mM
| 0.633333 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-FA_14
|
Mn^2+
|
1911762
|
Table
| 2,333.333333 |
Hammerhead Ribozyme
| null | null | null | null | 0.000321 |
mM
| 0.066667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-FA_14
|
Mg^2+
|
1911762
|
Table
| 200 |
Hammerhead Ribozyme
| null | null | null | null | 0.000243 |
mM
| 0.366667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-FA_28
|
Mn^2+
|
1911762
|
Table
| 1,500 |
Hammerhead Ribozyme
| null | null | null | null | 0.000187 |
mM
| 0.266667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-FA_29
|
Mn^2+
|
1911762
|
Table
| 1,433.333333 |
Hammerhead Ribozyme
| null | null | null | null | 0.000091 |
mM
| 0.066667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-FA_30
|
Mn^2+
|
1911762
|
Table
| 733.333333 |
Hammerhead Ribozyme
| null | null | null | null | 0.000157 |
mM
| 0.01 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-dA_total
|
Mn^2+
|
1911762
|
Table
| 66.666667 |
Hammerhead Ribozyme
| null | null | null | null | 0.000133 |
mM
| 0.133333 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-dA_11,14
|
Mn^2+
|
1911762
|
Table
| 950 |
Hammerhead Ribozyme
| null | null | null | null | 0.000264 |
mM
| 0.35 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-dA_14
|
Mn^2+
|
1911762
|
Table
| 1,316.666667 |
Hammerhead Ribozyme
| null | null | null | null | 0.000168 |
mM
| 0.233333 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-dA_28
|
Mn^2+
|
1911762
|
Table
| 1,433.333333 |
Hammerhead Ribozyme
| null | null | null | null | 0.000179 |
mM
| 0.333333 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-dA_29
|
Mn^2+
|
1911762
|
Table
| 1,900 |
Hammerhead Ribozyme
| null | null | null | null | 0.000058 |
mM
| 0.083333 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E-dA_30
|
Mn^2+
|
1911762
|
Table
| 1,483.333333 |
Hammerhead Ribozyme
| null | null | null | null | 0.000178 |
mM
| 0.366667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E2_unmodified
|
Mn^2+
|
1911762
|
Table
| 2,000 |
Hammerhead Ribozyme
| null | null | null | null | 0.000184 |
mM
| 0.416667 |
s^-1
|
mM^-1s^-1
| null | null |
25°C
|
7.5
|
E2-FA_20-22
|
Mn^2+
|
1911762
|
Table
| 2,266.666667 |
Hammerhead
| null |
S
| null | null | 0.0013 |
mM
| 0.008333 |
s^-1
| null | null | null |
50°C
|
8.5
|
WT
|
20 mM MgCl2, S concentration 0.05-0.6 µM
|
2646593
|
Table
| null |
Hammerhead
| null |
S
| null | null | 0.00063 |
mM
| 0.008333 |
s^-1
| null | null | null |
50°C
|
8.5
|
WT
|
20 mM MgCl2
|
2646593
|
Table
| null |
Hammerhead
| null |
S
| null | null | 0.0075 |
mM
| null | null | null | null | null |
50°C
|
8.5
|
WT
|
20 mM MgCl2, S concentration >0.6 µM
|
2646593
|
Text
| null |
Tetrahymena IVS
| null |
32P-labeled RNA
| null | null | 0.025 |
mM
| 0.013333 |
s^-1
|
mM^-1s^-1
| null | null |
30°C
|
7.5
|
WT
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Multisource
| 0.533333 |
Tetrahymena IVS
| null |
32P-labeled RNA
| null | null | 0.041 |
mM
| 0.0045 |
s^-1
|
mM^-1s^-1
| null | null |
30°C
|
7.5
|
C109G
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Multisource
| 0.11 |
Tetrahymena IVS
| null |
32P-labeled RNA
| null | null | 0.12 |
mM
| 0.00012 |
s^-1
|
mM^-1s^-1
| null | null |
30°C
|
7.5
|
G212C
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Multisource
| 0.001 |
Tetrahymena IVS
| null |
32P-labeled RNA
| null | null | null | null | null | null | null | null | null |
30°C
|
7.5
|
C109G:G212C
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Table
| null |
Tetrahymena IVS
| null |
32P-labeled RNA
| null | null | null | null | null | null | null | null | null |
30°C
|
7.5
|
G212A
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Table
| null |
Tetrahymena IVS
| null |
32P-labeled RNA
| null | null | null | null | null | null | null | null | null |
30°C
|
7.5
|
C211G
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Table
| null |
Tetrahymena IVS
| null |
32P-labeled RNA
| null | null | null | null | null | null | null | null | null |
30°C
|
7.5
|
∆A210
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Table
| null |
Tetrahymena IVS
| null |
32P-labeled RNA
| null | null | null | null | null | null | null | null | null |
30°C
|
7.5
|
C109G:C211G
|
200 mM NaCl, 6 mM MgCl2
|
2684642
|
Table
| null |
Tetrahymena ribozyme
| null |
32P-labeled RNA
| null | null | null | null | null | null | null | null | null |
42°C
|
7.5
|
G212C
|
200 mM NaCl, 10 mM MgCl2
|
2684642
|
Text
| null |
Hammerhead
| null | null | null | null | 0.0008 |
mM
| 0.004833 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.9
|
WT
|
10 mM Mg^2+
|
7487885
|
Table
| 6 |
Hammerhead
| null | null | null | null | 0.0005 |
mM
| 0.000667 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.9
|
^4H^C_3
|
10 mM Mg^2+
|
7487885
|
Table
| 1.333333 |
Hammerhead
| null | null | null | null | 0.0025 |
mM
| 0.000767 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.9
|
^4H^C_4
|
10 mM Mg^2+
|
7487885
|
Table
| 0.316667 |
Hammerhead
| null | null | null | null | 0.0007 |
mM
| 0.0016 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.9
|
^4S^U_4
|
10 mM Mg^2+
|
7487885
|
Table
| 2.333333 |
Hammerhead
| null | null | null | null | 0.0007 |
mM
| 0.003333 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.9
|
^4H^C_7
|
10 mM Mg^2+
|
7487885
|
Table
| 4.5 |
Hammerhead
| null | null | null | null | 0.001 |
mM
| 0.003167 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.9
|
^4S^U_16.1
|
10 mM Mg^2+
|
7487885
|
Table
| 3.166667 |
Hammerhead
| null | null | null | null | 0.0023 |
mM
| 0.001383 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.9
|
^4H^C_17
|
10 mM Mg^2+
|
7487885
|
Table
| 0.616667 |
Hairpin
| null |
sTRSV-C8A
| null | null | 0.0025 |
mM
| 0.000633 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.5
|
GUA
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
| 0.333333 |
Hairpin
| null |
sTRSV
| null | null | 0.000096 |
mM
| 0.006 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.5
|
GUC
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
| 60 |
Hairpin
| null |
sTRSV-C8G
| null | null | 0.00054 |
mM
| 0.000167 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.5
|
GUG
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
| 0.333333 |
Hairpin
| null |
sTRSV-C8U
| null | null | 0.00039 |
mM
| 0.00075 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.5
|
GUU
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
| 2 |
Hairpin
| null |
sCYMV1
| null | null | 0.0004 |
mM
| 0.005333 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.5
|
GUA
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
| 13.333333 |
Hairpin
| null |
sCYMV1-A8C
| null | null | 0.0015 |
mM
| 0.002333 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.5
|
GUC
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
| 1.5 |
Hairpin
| null |
sCYMV1-A8G
| null | null | null | null | null | null | null | null | null |
37°C
|
7.5
|
GUG
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
| null |
Hairpin
| null |
sCYMV1-A8U
| null | null | null | null | null | null | null | null | null |
37°C
|
7.5
|
GUU
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
| null |
Hairpin
| null |
sArMV
| null | null | 0.0014 |
mM
| 0.003167 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.5
|
GUA
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
| 2.333333 |
Hairpin
| null |
sArMV-A1C
| null | null | 0.00088 |
mM
| 0.004333 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.5
|
GUA
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
| 5 |
Hairpin
| null |
sArMV-A1C-A8C
| null | null | 0.0054 |
mM
| 0.003667 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.5
|
GUC
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
| 0.666667 |
Hairpin
| null |
sArMV-A1C-A8G
| null | null | 0.0017 |
mM
| 0.004333 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.5
|
GUG
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
| 2.5 |
Hairpin
| null |
sArMV-A1C-A8U
| null | null | 0.003 |
mM
| 0.006667 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.5
|
GUU
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
| 2.166667 |
Hairpin
| null |
sArMV
| null | null | 0.0026 |
mM
| 0.004833 |
s^-1
|
mM^-1s^-1
| null | null |
37°C
|
7.5
|
GUA
|
12 mM MgCl2, 2 mM spermidine
|
7495810
|
Table
| 1.833333 |
R32
| null |
all-RNA substrat
| null | null | null | null | null | null | null | null | null |
37°C
|
7
|
WT
|
25 mM CoCl2
|
7506830
|
Table
| null |
DRD32
| null |
all-RNA substrat
| null | null | null | null | null | null | null | null | null |
37°C
|
7
|
Chimeric DNA/RNA
|
25 mM CoCl2
|
7506830
|
Table
| null |
R32
| null |
all-RNA substrat
| null | null | null | null | null | null | null | null | null |
37°C
|
7
|
WT
|
25 mM MgCl2
|
7506830
|
Table
| null |
DRD32
| null |
all-RNA substrat
| null | null | null | null | null | null | null | null | null |
37°C
|
7
|
Chimeric DNA/RNA
|
25 mM MgCl2
|
7506830
|
Table
| null |
R32
| null |
all-RNA substrat
| null | null | null | null | null | null | null | null | null |
37°C
|
7
|
WT
|
25 mM MgSO4
|
7506830
|
Table
| null |
End of preview.
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