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Updating README with dataset features, subdirectories, citation, and contact. Fix links to preprint and github later.

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- ---
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- license: apache-2.0
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- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ ---
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+ license: apache-2.0
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+ tags:
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+ - chemistry
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+ size_categories:
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+ - 10K<n<100K
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+ ---
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+
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+ # TrajCast Dataset arXiv 2025
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+
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+ This dataset contains atomic configurations of molecular and condensed matter systems used to train, validate, and test the *TrajCast* framework for forecasting molecular dynamics (MD) trajectories using autoregressive equivariant message-passing networks.
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+ Each entry represents a snapshot from a MD trajectory, defined by the chemical elements, instantaneous positions, and velocities of all atoms, along with information about their state at a slightly later time interval Δt.
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+
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+ ## Subdirectories
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+
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+ The dataset includes data for the models presented and benchmarked in our [preprint](https://arxiv.org/), with time intervals varying for each system.
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+ Additionally, we provide a small example dataset to help you get started with our [example notebooks](https://github.com/IBM).
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+
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+ - **paracetamol**: Dataset for gas-phase paracetamol (20 atoms) using a time interval of 7 fs.
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+ - **quartz**: Data for crystalline quartz (162 atoms) using a time interval of 30 fs.
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+ - **water**: Data for liquid bulk water (192 atoms) using a time interval of 5 fs.
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+ - **example**: Subset of dataset for gas-phase paracetamol (20 atoms) using a time interval of 7 fs. About 5-10 % of the full dataset.
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+
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+ ## Dataset Features
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+
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+ The data comes in `.extxyz` format and we follow the units of style `real` from [LAMMPS](https://docs.lammps.org/units.html). Each entry correspondgs to an atomic configuration and includes the following fields:
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+
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+ - **species**: The type of atom (e.g., C for Carbon, O for Oxygen (O), ...).
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+ - **positions**: 3D atomic positions (in Angstroms).
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+ - **velocities**: 3D atomic velocities (in Angstroms per fs).
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+ - **displacements**: 3D atomic displacements to the new positions after time interval Δt (in Angstroms).
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+ - **update_velocities**: 3D atomic velocities at time interval Δt (in Angstroms per fs).
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+ - **timestep**: Time interval Δt (in femtoseconds).
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+ - **pbc**: Information about periodic boundary conditions (e.g., `T T T`).
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+ - **Lattice**: The lattice vectors of the simulation box.
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+ - **num_atoms**: The total number of atoms in the system (first line).
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+
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+
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+ ## Citation
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+
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+ If you decide to use this dataset, please consider citing our preprint
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+
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+ ```
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+ @misc{Thiemann2025Force-Free,
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+ title={Force-Free Molecular Dynamics Through Autoregressive Equivariant Networks},
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+ author={Thiemann, Fabian L and Reschützegger, Thiago, and Olarte-Plata, Juan D. and Taddese, Tseden and Esposito, Massimiliano, and Martelli, Fausto},
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+ year={2025},
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+ eprint={...},
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+ archivePrefix={arXiv},
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+ primaryClass={...},
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+ url={https://arxiv.org/...},
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+ }
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+ ```
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+
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+ ## Contact
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+
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+ For more information or if you like to contribute, please reach out to [email protected].