iOS Privacy: Easily get a user's Apple ID password, just by asking
This is related to an issue called root-phishing or superuser-phishing. You can do this with the Windows admin password prompt, the MacOS prompt, or with Linux sudo, as long as you can run code from a user account or edit a single file.    alias sudo='sudo ./somethingbad; sudo'

I'm surprised you don't hear about this that often. There is no perfect solution, since any visual feedback the operating system can do to make their prompt "official-looking" is possible by an application as well, unless the operating system can display information the user would recognize that it not accessible by the application. A perfect solution on iOS is to "minimize" the application so that the home screen is shown and then show the password prompt. The user would immediately recognize the wallpaper and icons to be theirs, which are two pieces of information unavailable to the application. However, the application could still fool the user by displaying the box over the application anyway.