### Bug description

# Example
[test.zip](https://github.com/quarto-dev/quarto-cli/files/11000206/test.zip)

# OS
Linux - Arch

# Quarto check

```
[✓] Checking versions of quarto binary dependencies...
      Pandoc version 3.1.1: OK
      Dart Sass version 1.55.0: OK
[✓] Checking versions of quarto dependencies......OK
[✓] Checking Quarto installation......OK
      Version: 1.3.272
      Path: /opt/quarto/bin

[✓] Checking basic markdown render....OK

[✓] Checking Python 3 installation....OK
      Version: 3.10.9 (Conda)
      Path: /home/dhruva/.julia/conda/3/x86_64/bin/python3
      Jupyter: 5.2.0
      Kernels: julia-1.9, python3

[✓] Checking Jupyter engine render....OK

[✓] Checking R installation...........(None)

      Unable to locate an installed version of R.
      Install R from https://cloud.r-project.org/
```

### Checklist

- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution.
- [X] Please provide the output of `quarto check` so we know which version of quarto and its dependencies you're running.
cscheid
2023-03-17T10:15:42Z
DhruvaSambrani
bug crossref
v1.3
closed
Book - Chapter crossref breaks if file contains code blocks
https://github.com/quarto-dev/quarto-cli/issues/4866