How to: Multiple iOS Enterprise Applications inhouse I am trying to develop two separate applications for our company using the Enterprise Program.
Regardless of what I've tried, the second app always replaces the first app...

Create iOS Production cert1, download, keychain, upload, Provisioning Profile 1 created.

Repeat iOS Production cert2, download, keychain, upload, Provisioning Profile 2 created.

I am not sure why I have gone wrong. Is there a step I need to take differently?
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edit:
I have gone back to Apple and created a second app id.. the bundle identifier is the same. I used com.domain.* and org.domain.* for both. It will not allow me to create a third (understandably) ... Will we be limited to two apps total?
Are you using two different bundle IDs in Xcode's project target?  That's the string that looks like this:

com.yourcompany.app1
com.yourcompany.app2

or

com.yourcompany.allapss.app1
com.yourcompany.allapss.app2

If I assume that you've done your provisioning profiles correctly, then the reason an app would replace another would be if they had identical bundle IDs.