Where is the 'Where from' meta data stored when downloaded via Chrome? I'm running Mavericks with Chrome, and when I download an image/file it saves the 'Where from' when viewing via Get Info. This also happens in Safari.

Now, I understand there is a separate download history which can be viewed and deleted via the the tricks in the following article: http://www.cultofmac.com/179873/list-your-macs-entire-download-history-at-once-os-x-tips/ These are used when opening Applications for the first time to show the user where they come from.

However, I've deleted this and confirm it's empty but yet it still shows in the 'Where from.' I've done some further tests and uploaded the image to view the EXIF and meta data but it doesn't appear to be stored in the files meta data at all. So where could it be stored?

Does anyone know how this 'Where from' meta data is stored, and where it is stored. Does it stay with the file if you put the file on the USB drive and open on a different computer?

I'm not so much worried about removing it, but I just can't see where it comes from?
It's stored in an extended attribute on the file. Specifically the com.apple.metadata:kMDItemWhereFroms attribute. It may stay with the file when you move it to different computers, but it depends on the filesystem or file sharing protocol you use. If you move it to another Mac on an HFS+ disk, it will likely keep it, but not necessarily if you transfer over the network, and most likely not with an external disk with a non-HFS+ filesystem.

You can check a file by running xattr -lp com.apple.metadata:kMDItemWhereFroms myfile in the Terminal, or remove it with xattr -d com.apple.metadata:kMDItemWhereFroms my file. ls -l@ flag is also useful; it will list the names of xattrs along with the usual ls information.

If you want to remove it from multiple files, have a look at this question: How to remove xattr com.apple.quarantine from all .webarchive files with that extended attribute?