What made my solution cloudy? I may know, but I would like an expert opinion and a possible solution?

I had an ethanol product from molasses, brown sugar and yeast which was clear. I then added (and feel all information is important):
1 vanilla bean
1 cinnamon stick
whole allspice berries 
whole black peppercorns
1/2 star anise
1/8 tsp grated nutmeg 
3, 2-inch pieces ginger 
3-inch strips orange zest

I let that sit for 2 weeks and remained clear. I then poured that solution through a coffee filter into beaker and it remained clear. 

Then I took tap water, boiled it and poured it into the bottle with the used spices and let that sit for a day. I then used that water to dilute the ethanol solution to a lower percentage. Again, running it through a coffee filter.

Final product, cloudy. 

The only thing I can think of is my water. We get our water from a well so it could be high in mineral content. 

Would water be the problem?
And solution to make it clear again?
You likely formed an emulsion. Many of the flavor compounds in the products you mentioned are negligibly soluble in water but soluble in ethanol. Once you add the ethanol extract to water the much of the ethanol from the extract will mix with into the water but the flavor compounds in the extract will not dissolve in the water, which leaves micro-sized spheres of flavor floating around the water.  these micro-sized spheres have a different refractive index of light and thus disperse the light making it cloudy.  The same thing will happen if you mix water and oil with soap.  If you look at Gatorade or PowerAde sport drinks all of them are cloudy because of the emulsion produced from micro-size pockets of flavor in the drink.