Can cycling adversely affect male fertility? Is there any evidence to suggest that cycling adversely affects male fertility?
Most scientific studies on cycling and urogenital problems are written with clinicians in mind, to make them aware of possible symptoms that they will encounter. Often these studies get summarized into review articles. One such article (Leibovitch and Mor, 2005), reviewed 62 relevant studies. They say:


  The reported incidence of bicycling related urogenital symptoms
  varies considerably. The most common bicycling associated urogenital
  problems are nerve entrapment syndromes presenting as genitalia
  numbness, which is reported in 50–91% of the cyclists, followed by
  erectile dysfunction reported in 13–24%. Other less common symptoms
  include priapism, penile thrombosis, infertility, hematuria, torsion
  of spermatic cord, prostatitis, perineal nodular induration and
  elevated serum PSA, which are reported only sporadically.


When examined individually, many of these studies have limitations (small number of study subjects, no followup, etc.), but when taken as a whole, they are pretty conclusive that an association exists between cycling and urogenital problems.

The only study that I could find that was population-based, i.e., included men with a range of cycling durations, was Marceau et al., 2001. Their data on 1,709 men come from the Massachusetts Male Aging Study. After controlling for potentially confounding factors ("age, energy expenditure, smoking, depression and chronic illness"), they found that men who cycled more than 3 hours per week were 72% more likely to have erectile disfunction than those who cycled less than 3 hours per week. They are cautious, however (emphasis mine):


  Bicycling 3 h or more per week may be associated with ED. Data
  revealed that there may be a reduced probability of ED in those who
  ride less than 3 h per week and ED may be more likely in bikers who
  ride more than 3 h per week. More population-based research is needed
  to better define this relationship.


The last sentence is key. Granted, there are drawbacks to population-based studies like this. One major problem is that the data are self-reported. Another drawback is they their sample probably does not include elite or high-level sport cyclists, who might have better equipment or better technique.

Does this mean that your experience may vary? Absolutely.