dishing on alfine hub I am building a wheel with an Alfine 8 speed hub which has space for a disk brake.
I am measuring the dishing by supporting the rim and measuring the distance from the table to the end of the through bolt of the hub, then flipping the wheel over, make the same measurement and then compare. They should be the same so that the hub is in the middle of the rim.

I am now on my third attempt after truing the wheel laterally and vertically I check the dishing and it is leaning towards the right (chain side) by over 1cm, cm not mm. By eyeing the wheel the hub does not look too out of center.

My question: is this method of measuring the dishing suitable for an Alfine hub with disc brake or should I expect some difference between the sides.  Basically the difference is too great to be altered by adjusting the spokes.

Thanks for reading.
That sounds like it should work, although I would be measuring to the axle nut, not the axle itself, as the axle may not have exactly the same amount sticking out of both sides of the hub (likely not an issue). If the rim is dished to the right then your driveside spokes are too tight and/or your non drive side spokes are too loose. Give everything about a half a turn- driveside loosened, non drive side tightened- and see where it gets you. Also, are you using a spoke tensiometer?
Let me offer an alternate method of getting your wheel trued up without a truing stand which might make things easier for you. Take your wheel (no tire) and drop it in your frame with the bike upside down, or put it in a workstand if you have one. Don't put the chain on. Attach a couple of zip ties to the chainstays or seatstays and cut them short, but not so short that they wont touch the rim. you can rotate the zip ties on the stays to get the closer to or further away from the rim to gauge how close to true you are and you can slide them up and down on the stays to see how close to round your are. That is basically the same way a professional truing stand works. When you are close on one side, flip the wheel around in the dropouts and repeat the process until you're happy with the results.