Resistance genes Michael Luongo/Bloomberg/Getty

This New Scientist article, usually accessible only to subscribers, is made available for free by the Museum of Applied Arts and Sciences in Sydney, Australia

The gut bacteria inside 1000-year-old mummies from the Inca Empire are resistant to most of today’s antibiotics, even though we only discovered these drugs within the last 100 years.

“At first we were very surprised,” Tasha Santiago-Rodriguez of California Polytechnic State University in San Louis Opisbo, told the Annual Meeting of the American Society for Microbiology last month.


Her team studied the DNA within the guts of three Incan mummies dating back to between the 10th and 14th centuries and six mummified people from Italy, from between the 15th and 18th centuries. They found an array of genes that have the potential to resist almost all modern antibiotics, including penicillin, vancomycin and tetracycline.

These ancient genes were largely in microbes whose resistance is problematic today, including Enteroccocus bacteria that can infect wounds and cause urinary tract infections. But they found that many other species, including some harmless ones, carried some of these resistant genes too.

Enterococcus enigma

“When you think about it, almost all these antibiotics are naturally produced, so it makes sense to find antibiotic genes as well,” says Santiago-Rodriguez.

Their finding shows that genes that can confer resistance to antibiotics were relatively widespread hundreds of years before Alexander Fleming discovered penicillin in 1928. “It’s ridiculous to think evolution of antibiotic resistance began when penicillin was discovered,” said team-member Raul Cano, also at California Polytechnic State University, at the meeting while discussing the findings. “It’s been going on for 2 billion years.”

These genes existed long before antibiotics became common, but it is our overuse of these drugs in both people and livestock that caused the superbug resistance to explode worldwide, said Cano.

“This is exciting data,” says Adam Roberts, who studies antibiotic resistance genes at University College London. While it is already well known that antibiotic resistance occurred naturally before people started using antibiotics, this study shows that resistance genes were already within the human gut long before we started using these drugs, he says.

“It begs the question of what was selecting for these genes at this time? Was it the natural production of antibiotics by other bacteria, or were there other, as yet unknown forces at play?” asks Roberts.