One Mouse, Two Cultures: Isolation and Culture of Adult Neural Stem Cells from the Two Neurogenic Zones of Individual Mice

The neurosphere assay and the adherent monolayer culture system are valuable tools to determine the potential (proliferation or differentiation) of adult neural stem cells in vitro. These assays can be used to compare the precursor potential of cells isolated from genetically different or differentially treated animals to determine the effects of exogenous factors on neural precursor cell proliferation and differentiation and to generate neural precursor cell lines that can be assayed over continuous passages. The neurosphere assay is traditionally used for the post-hoc identification of stem cells, primarily due to the lack of definitive markers with which they can be isolated from primary tissue and has the major advantage of giving a quick estimate of precursor cell numbers in brain tissue derived from individual animals. Adherent monolayer cultures, in contrast, are not traditionally used to compare proliferation between individual animals, as each culture is generally initiated from the combined tissue of between 5-8 animals. However, they have the major advantage that, unlike neurospheres, they consist of a mostly homogeneous population of precursor cells and are useful for following the differentiation process in single cells. Here, we describe, in detail, the generation of neurosphere cultures and, for the first time, adherent cultures from individual animals. This has many important implications including paired analysis of proliferation and/or differentiation potential in both the subventricular zone (SVZ) and dentate gyrus (DG) of treated or genetically different mouse lines, as well as a significant reduction in animal usage.


Introduction
The neurosphere assay 1,2 and the adherent monolayer culture 3,4 , both developed in the early 1990s, still remain the gold standard in vitro neural stem cell assays. In these assays, primary tissue is micro dissected from a particular brain region, dissociated into a single cell suspension and cultured in the presence of the mitogens epidermal growth factor (EGF) and fibroblast growth factor-2 (FGF2) to form either free-floating clusters (neurospheres) or adherent monolayers. Both systems have a number of advantages and disadvantages and careful consideration should be given to the question that is to be addressed before one or the other system is chosen.
Neurospheres allow a straightforward read-out of differences in precursor cell number and potential. In addition, neurospheres are also a useful tool to study intrinsic specification of the cells when removed from their normal external environment. Extrinsic cues can be studied by simply adding the factor of interest to the growth medium and quantifying the number and size of the neurospheres generated. The major drawback of neurospheres however, is that they form their own niche, with the cells at the center of the neurospheres (particularly large neurospheres) being more differentiated than those on the surface 5 . Neurospheres contain a mix of stem cells, committed progenitors, and differentiated cells and the cell-cell interactions within the neurospheres counteract the maintenance of the stem cells. This is why neurospheres contain only a small number of true stem cells [6][7][8] . Adherent monolayer cultures also provide a good in vitro system to model in vivo proliferation. Adherent cultures, in which the cells remain more isolated and homogeneous, can eliminate the heterogeneous nature of the neurosphere. Under these growth conditions the precursor cells proliferate rapidly and almost all cells are dividing and express the characteristic neural precursor markers Nestin, Sox2, and BLBP. The major disadvantage of the monolayer culture system compared to the neurosphere assay is that individual precursor-derived clones are unable to be monitored and quantified.

Basic Setup and Preparation of Culture Medium
1. At least two days prior to commencing the experiment, prepare Poly-D-lysine (PDL)/Laminin coated plates for adherent monolayer cultures.
To prepare wells/flasks add enough PDL (10 µg/ml in dH 2 O) to coat the surface and incubate overnight at room temperature. Remove the solution from the dish and wash the dish three times with dH 2 O. Allow to air dry. Add Laminin (5 µg/ml in cold DMEM:F12) and incubate at 37°C overnight. Remove the Laminin and either use the plates immediately or store with the Laminin at -20 °C until required. 2. Prepare fire polished pipettes with "medium" and "small" bores by rotating glass Pasteur pipettes in a flame until the edges become rounded.
Autoclave to sterilize. 3. On the day of dissection, prepare the appropriate amount of culture medium by mixing Neural Basal Medium with 2% B27, 1x GlutaMAX, 2 µg/ml heparin, 50 units/ml Penicillin/Streptomycin, 20 ng/ml purified mouse receptor-grade epidermal growth factor (EGF), and 20 ng/ml recombinant bovine fibroblast growth factor (FGF-2). Warm the culture medium to 37 °C in a water bath. 4. For the SVZ dissociation, prepare 0.05% Trypsin-EDTA and 0.125 mg/ml Trypsin inhibitor containing 0.01 mg/ml DNaseI. Equilibrate these solutions to 37 °C. 5. Set up a dissection microscope and prepare the tools needed to remove the brain (scissors and small spatula) and for SVZ and DG dissections (scalpel, 27 G needle attached to 1 ml syringe, 1 x #7 forceps, 1 x #5/45 forceps) by soaking in 70% ethanol.

Harvesting of Adult Mouse Brains and SVZ/DG Microdissections
1. Anesthetize single adult (8-week-old) mice according to the appropriate institutional guidelines. Perform cervical dislocation. 2. Spray the head with 70% ethanol to sterilize the area and to minimize the amount of fur that adheres to the scissors and brain. Using sharp scissors decapitate the animal at the base of the brain stem. 3. Holding the head at the base of the skull, cut the skull between the two olfactory bulbs by placing one blade of a small pair of scissors into each eye cavity and cutting coronally. Next, make two lateral cuts at the base of the skull, followed by a longitudinal cut through the skull along the sagittal suture. Caution: ensure the angle of the scissors is as shallow as possible to avoid damaging the underlying brain. 4. Expose the brain by peeling back the skull with either the blade of the scissors or a pair of curved forceps. Free the brain from the skull using a small spatula and place into cold PBS. 5. Rinse brains with PBS to remove blood and fur. 6. Transfer brains to a 10 cm plastic Petri dish containing PBS 7. Place Petri dish containing the brain under a dissecting microscope at low magnification and position the brain on its ventral surface. Using fine curved forceps remove the olfactory bulbs while holding the brain in position by the cerebellum. 8. Rotate the brain onto the dorsal aspect and using a scalpel make a coronal cut through the brain at the level of the optic chiasm 9. To microdissect the SVZ (for more detailed instructions, see also Azari et al. 10 ), place the rostral portion of the brain so that the cut coronal surface faces upwards and focus the microscope onto a higher magnification. Remove and discard the septum using fine curved forceps. 10. Dissect the SVZ (the thin layer of tissue surrounding the ventricle) by placing the tip of one blade of a pair of fine curved forceps in the lateral corner of the lateral ventricle immediately under the corpus callosum and the other approximately 1 mm into the tissue immediately adjacent to the ventricle. Press down the forceps towards the base of the dish and towards the ventral aspect of the ventricle to remove a small triangular piece of tissue. Place the dissected SVZ into a Petri dish on ice. 11. To microdissect the DG (for more detailed instructions, see also Hagihara et al. 11 ), place the caudal portion of the brain in the Petri dish and cut along the longitudinal fissure using a scalpel. 12. Under a dissection microscope, remove the cerebellum and the diencephalon using forceps. 13. Refocus the microscope so that the borders around the DG are now visible. To remove the dentate gyrus, insert the tip of a 27 G needle and slide along the border between the DG and Ammon's horn. Using the fine forceps, free the DG from the surrounding tissue.

SVZ Tissue Dissociation
1. Mince the tissue using a scalpel blade for approximately 1 min until no large pieces remain. 2. Transfer the minced tissue to a 15 ml tube using 1 ml of prewarmed 0.05% Trypsin-EDTA and incubate for 7 min in a water bath set to 37 °C. 3. To stop the enzymatic reaction, add 1 ml of trypsin inhibitor containing DNaseI and mix the contents by flicking the tube. 4. Pellet the suspension by centrifugation at 300 x g for 5 min and discard the supernatant 5. Resuspend the pellet in 1 ml of growth medium and dissociate by gently pipetting up and down approximately 7-10x using a P1000 pipette. Caution: over triturating can lead to increased cell death and will negatively impact on subsequent cell growth. 6. Add growth medium to a total volume of 5 ml and pass the cell suspension through a 40 µm sieve to remove debris and undissociated tissue clumps. 7. Centrifuge at 300 x g for 5 min, discard the supernatant and resuspend the resulting pellet in 200 µl growth medium.
1. Mince the tissue using a scalpel blade for approximately 1 min until no large pieces remain and transfer into prewarmed PDD enzyme mix (Papain 2.5 U/ml, Dispase 1 U/ml, DNaseI 250 U/ml). Incubate for 20 min at 37 °C, mixing by inverting the tube every 3-5 min. 2. Dissociate the tissue mechanically using a medium bore, fire polished, Pasteur pipette by pipetting up and down gently 10x. 3. Incubate for a further 10 min at 37 °C, mixing by inverting the tube every 3-5 min. 4. Further dissociate the tissue mechanically using a small bore, fire polished Pasteur pipette by pipetting up and down gently 10x. 5. Centrifuge at 130 x g for 5 min.

Generation of Adherent Monolayer Cultures
1. Plate the dissociated SVZ or DG tissue into a single PDL/Laminin coated well of a 96-well plate and incubate at 37 °C with 5% CO 2 .
2. Approximately 24 hr after plating, once the cells have adhered to the coated surface, exchange the growth medium to further remove excess debris. 3. Every subsequent 3-4 days, exchange half of the growth medium with fresh medium to replenish the growth factors. 4. Repeat until the cells reach approximately 80% confluency and are ready to be passaged. Note: the time between plating and the first passage can take up to 2-3 weeks.

Passaging of Adherent Monolayer Cultures
1. When the cultures reach approximately 80% confluency remove the medium from the well and wash with PBS. Note: Do not allow the cells to exceed 90% confluency as this can lead to detachment of cells and neurosphere formation and in addition, increased levels of cell death.

Differentiation of Adherent Monolayer Cultures
1. To differentiate the adherent monolayer cultures, plate proliferating cells onto PDL/Laminin coated coverslips at a density of 1 x 10 4 cells/cm 2 in growth medium containing 20 ng/ml EGF and 10 ng/ml bFGF. 2. When the cells reach approximately 80% confluency (usually 2 days), replace the growth medium with medium containing 5 ng/ml bFGF and 0 ng/ml EGF. 3. Following 2 days in 5 ng/ml bFGF, replace the medium with growth medium in the absence of both mitogens for a further 3 days. Note: during this period a significant amount of cell death will occur. 4. After a total of 5 days, wash the differentiated cells with PBS to remove any dead cells then fix with 4% paraformaldehyde (PFA) for 20 min at room temperature. 5. Wash again with PBS to remove any PFA and store coverslips in wells in 1 ml PBS at 4 °C.

Neurosphere Culture and Quantification
1. Dilute the dissociated SVZ or DG tissue from one animal in 20 ml of culture medium and plate 200 µl/well across a 96-well plate using a 10 ml multidoser pipette. 2. Incubate at 37 °C with 5% CO 2 for 6-7 days for SVZ-derived neurospheres and 10-12 days for DG-derived neurospheres.
Note: growth for longer than these recommended incubation times will result in overgrowth and will lead to cell death in the center of the neurospheres and/or, spontaneous attachment and differentiation. 3. Count and measure the diameter of the neurospheres using an eyepiece graticule fitted to an upright light microscope

Representative Results
Although the two neurogenic regions of the adult mouse brain both contain neural precursor cells, these cells can behave quite differently when cultured in vitro. The adherent monolayer cultures generated from both regions appear morphologically indistinguishable (Figure 1A), however, the SVZ-derived adherent cultures proliferate faster and need to be passaged, on average, 1-2 days earlier than those derived from the DG. As neurospheres, the SVZ-derived precursor cells also proliferate faster and form larger neurospheres (Figure 1B) than the DG-derived precursor cells (Figure 1C). Whilst SVZ-derived neurospheres are typically counted after 6-7 days in culture, DG-derived neurospheres are usually quantified after 10-12 days. In addition, a far greater number of neural precursor cells reside in the SVZ compared to the DG, as evidenced by the almost 10-fold greater number of neurospheres that can be generated from this region (SVZ: 1,173±74.9 vs. DG: 145.3±26.4; p = <0.0001; n = 10 animals per group; Figure 2A).
Studies have shown that the precursor cells within the SVZ and DG respond to different stimuli. The precursor cells in the DG are activated by specific types of spatial learning and by stimuli such as environmental enrichment and physical activity, whereas the SVZ precursor cells are activated by olfactory learning and olfactory enrichment. Consistent with this, one of us (TLW) previously demonstrated that the DG contains a population of latent stem and progenitor cells that can be activated by neural excitation [15][16][17][18] . In contrast, we found that the SVZ precursor cells respond quite differently to this stimulus, with a decrease in neurosphere number in response to depolarizing levels of KCl 17. Here, we have repeated this experiment, plating half of the isolated cells derived from the SVZ and DG of individual animals in depolarizing levels of KCl and the other half in control KCl levels. We demonstrate, as previously, that while the DG precursor cells are activated by depolarization (101.2±17.4 vs.