Individual and combined roles of malonichrome, ferricrocin, and TAFC siderophores in Fusarium graminearum pathogenic and sexual development

Intra- and extracellular iron-chelating siderophores produced by fungal non-ribosomal peptide synthetases have been shown to be involved in reproductive and pathogenic developmental processes and in iron and oxidative stress management. Here we report individual and combined contributions of three of these metabolites to developmental success of the destructive cereal pathogen Fusarium graminearum. In previous work, we determined that deletion of the NPS2 gene, responsible for intracellular siderophore biosynthesis, results in inability to produce sexual spores when mutants of this homothallic ascomycete are selfed. Deletion of the NPS6 gene, required for extracellular siderophore biosynthesis, does not affect sexual reproduction but results in sensitivity to iron starvation and oxidative stress and leads to reduced virulence to the host. Building on this, we report that double mutants lacking both NPS2 and NPS6 are augmented in all collective phenotypes of single deletion strains (i.e., abnormal sexual and pathogenic development, hypersensitivity to oxidative and iron-depletion stress), which suggests overlap of function. Using comparative biochemical analysis of wild-type and mutant strains, we show that NPS1, a third gene associated with siderophore biosynthesis, is responsible for biosynthesis of a second extracellular siderophore, malonichrome. nps1 mutants fail to produce this metabolite. Phenotypic characterization reveals that, although single nps1 mutants are like wild-type with respect to sexual development, hypersensitivity to ROS and iron-depletion stress, and virulence to the host, triple nps1nps2nps6 deletion strains, lacking all three siderophores, are even more impaired in these attributes than double nps2nps6 strains. Thus, combinatorial mutants lacking key iron-associated genes uncovered malonichrome function. The intimate connection between presence/absence of siderophores and resistance/sensitivity to ROS is central to sexual and pathogenic development.


INTRODUCTION
The evolutionary diversity and array of genes in filamentous fungi encoding megaenzymes for biosynthesis of secondary metabolites underscore the importance of these factors in fungal biology. While many secondary metabolites are best known for their favorable (e.g., medicinals) or unfavorable (e.g., toxins) effects on other organisms such as humans and agricultural crops, these attributes are largely corollaries to their principal functions in the fungal cells themselves. For example, intra-and extracellular iron-chelating siderophores produced by non-ribosomal peptide synthetases (NRPSs) are centrally, but differentially, involved in developmental processes.
Iron is an essential component of aerobic metabolism and numerous enzymes have Fe-ions as a cofactor. Yet, intracellular free iron (labile iron), in the presence of hydrogen peroxide or superoxide, generates highly cytotoxic reactive oxygen species (ROS), i.e., hydroxyl radicals, from less toxic hydrogen peroxide H 2 O 2 through the Haber-Weiss/Fenton reaction (Fe 2+ + H 2 O 2 → Fe 3+ + OH · + OH − ). Tight regulation of the labile iron pool is thus critical for aerobic organisms. Paradoxically, though essential and abundant in the earth's crust, bio-available iron is limited due to low solubility. To solve this dilemma and increase iron solubility, fungi and bacteria produce siderophores, lowmolecular weight organic compounds with strong iron-chelating activity biosynthesized by NRPSs (Lee et al., 2005;Oide et al., 2006).
Most fungal siderophores are of the hydroxamate type, produced through condensation of N 5 -acyl-N 5 -hydroxy-L-ornithine (AHO) units by dedicated NRPSs. Fungal hydroxamate-type siderophores tend to be one of three types, ferrichrome, coprogen, or fusarinine. Members of the latter two groups are produced simply through condensation of AHO units by the NRPSs encoded by the conserved NPS6/sidD genes (Oide et al., 2006;Schrettl et al., 2007) while the ferrichrome-type is produced through condensation of AHO units plus amino acids such as glycine, serine, or alanine (Bushley et al., 2008). Genes encoding ferrichrome-type siderophore synthetases are conserved across the fungal kingdom and phylogenetic analyses have provided evidence that they can be divided into two lineages, one corresponding to Cochliobolus heterostrophus NPS2 homologs and the other to Aspergillus nidulans sidC homologs (Bushley et al., 2008). Some species, including Gibberella zeae (hereafter, Fusarium graminearum http://www.ncbi.nlm.nih.gov/pubmed/23379853), carry orthologs of both lineages in their genomes. The metabolites produced by Nps2 and SidC are indispensable for sexual development in heterothallic C. heterostrophus, and homothallic F. graminearum and A. nidulans, indicating functional conservation of these metabolites (Eisendle et al., 2006;Oide et al., 2007). However, functional divergence/overlap between the metabolites produced by the ferrichrome-type siderophore synthetases with distinct evolutionary histories has not been evaluated in a single species.
In our previous work with F. graminearum, we identified two NRPSs, one encoded by the NPS2 gene and the other by the NPS6 gene, that are involved in siderophore production (Oide et al., 2006(Oide et al., , 2007. Biochemical characterization of nps2 mutants revealed that the Nps2 protein is responsible for biosynthesis of ferricrocin, which acts as an intracellular iron-capturing metabolite in this species. Deletion of NPS6, on the other hand, abolished production of the extracellular siderophore, triacetyl fusarinine C (TAFC) and its derivatives. nps2 mutants are greatly impaired in sexual development, whereas nps6 mutants show pleiotropic defects including attenuated virulence to wheat, hypersensitivity to ROS, increased sensitivity to iron depletion and reduced asexual sporulation (Oide et al., 2006). Notably, nps2 mutants are not affected in any of the characteristics found for nps6 mutants and vice versa. nps6 mutants are thus wild-type (WT) in terms of sexual reproduction, highlighting distinct contributions of intra-and extracellular siderophores to pathogenic, vegetative, and reproductive development of F. graminearum.
In addition to NPS2 and NPS6, we (and others) have noted that the genome of F. graminearum carries another NPS gene likely involved in siderophore biosynthesis (Oide et al., 2007;Tobiasen et al., 2007;Hansen et al., 2012;Adam et al., 2015;Sieber et al., 2014) NPS1 is an ortholog (Bushley et al., 2008) of A. nidulans sidC whose encoded NRPS accounts for ferricrocin synthesis in this species (Eisendle et al., 2006). Our previous attempt to identify the metabolite biosynthesized by Nps1 was unsuccessful, and phenotypic characterization of nps1 mutants failed to link Nps1 to iron metabolism (Oide et al., 2007). Much earlier work described a siderophore named malonichrome that is produced by a Fusarium roseum strain (ATCC 12822) (Emery, 1980). The structure established for malonichrome is that of a ferrichrome-type compound, a cyclic hexapeptide with one alanine, two glycines, and three AHOs in which the hydroxylamino groups are acylated with malonic acid. More recently, a study on Fusarium oxysporum (strain FGSC 9935) reported that this fungus produces three different ferrichrome-type siderophores, ferricrocin, ferrichrome C, and malonichrome (Lopez-Berges et al., 2012). Like F. graminearum, F. oxysporum has corresponding orthologs of NPS1 (FOXG_17422), NPS2 (FOXG_06448), and NPS6 (FOXG_09785).
In this study, we report characterization of strains of F. graminearum in which NPS1, NPS2, and NPS6 genes are deleted in all possible combinations. Double nps2nps6 mutant strains completely lack ability to make the intracellular siderophore ferricrocin and the extracellular fusarinine siderophores, and are augmented in the phenotypes identified in each single nps-deletion strain (i.e., hypersensitivity to iron depletion and oxidative stress, reduction in virulence, and abnormal sexual development), rather than the sum of each phenotype, which suggests overlap in function. We also formally demonstrate that NPS1 is responsible for the production of the previously described second extracellular ferrichrome-type siderophore, malonichrome (Emery, 1980). Thorough characterization of the nps1nps6 and nps1nps2nps6 strains uncovered roles of Nps1 in stress tolerance, sexual development, and virulence to the host.

FUNGAL STRAINS AND FUNGAL AND PLANT CULTURE CONDITIONS
The F. graminearum (G. zeae) wild-type strain Gz3639 was used for all experiments (Table 1). Unless otherwise mentioned, all cultures were grown on complete medium [CM; (Leach et al., 1982)] at 24 C under continuous fluorescent light (Watt-Miser F34 WW/RS/WM, Warm White, General Electric). Wheat cultivar Norm was grown (four plants per #6 pot) in a greenhouse in 14 h light/10 h dark at 25 C.

DNA MANIPULATIONS AND FUNGAL TRANSFORMATIONS
Fungal genomic DNA was prepared as described previously (Oide et al., 2006(Oide et al., , 2007. Unless otherwise mentioned, all PCR reactions were carried out with PCR master mix (Promega) following the manufacturer's recommendations. Transformation of F. graminearum was carried out as described previously (Oide et al., 2006(Oide et al., , 2007. All transformants were purified by two rounds of single asexual spore isolation. All mutants used in this report are listed in Table 1.

CONSTRUCTION OF F. GRAMINEARUM nps1nps6, nps2nps6 DOUBLE AND nps1nps2nps6 TRIPLE MUTANT STRAINS
Single deletion nps1, nps2, and nps6, and double deletion nps1nps2 mutants were constructed previously (Oide et al., 2006(Oide et al., , 2007. Double deletion mutants nps1nps6 and nps2nps6 were constructed by deleting NPS6 in the hygromycin B resistant strains Gznps1-5-1 and Gznps2-6-1 (Oide et al., 2007), respectively (Table 1). Triple nps1nps2nps6 mutant strains were constructed by deleting NPS6 in the hygromycin B and G418 resistant nps1nps2 mutant strain Gznps2-6-1nps1-5-1 (Oide et al., 2007). For this, the NPS6 ORF was partially replaced with the Streptomyces griseochromogenes BSD gene, which confers resistance to the antibiotic blasticidin S (BS, Invitrogen). The BSD gene, under the control of the A. nidulans TrpC promoter and terminator was PCR amplified from pBF101 (Kimura et al.,  1994) with the primer pair M13F/M13R. A linear construct for transformation was prepared in the same way as described for partial deletion of NPS6 with the gene (bar) for bialaphos resistance (Oide et al., 2006). Screening of transformants was carried out on complete medium without salts (CMNS) with 300 µg/ml BS. Deletion of NPS6 was confirmed by PCR using methods described earlier (Oide et al., 2006;Inderbitzin et al., 2010).

STRESS SENSITIVITY ASSAYS
Each strain was grown on solid minimal medium (MM) with or without the stress agent. Sensitivity to each stress was scored by measuring the colony radius of 5 day-old cultures on plates with the stress agent. Sensitivities to H 2 O 2 , the superoxide-generator, KO 2 , and the membrane-permeable iron chelator, 2-2 -dipyridyl (2DP), were examined by determining minimal inhibitory concentration (MIC) of each stress agent, as described previously (Oide et al., 2006(Oide et al., , 2007 To test sensitivity to iron depletion, growth of WT and different mutant strains was examined on MM and MM with 200/400 µM ferric citrate. Growing tips of mycelia were transferred from 3 day-old cultures on CM plates to fresh plates of MM with/without ferric citrate with a cork borer (3 mm diameter). The plates were incubated for 5 days under standard culture conditions. Five replicates were set up for each strain and for each condition. Average colony diameters of 5 day-old cultures were determined for each strain, and the data were analyzed by one-way analysis of variance (ANOVA) using Excel 2007.
In addition to determination of MIC of 2DP, sensitivity to 2DP of mutant strains was examined. Growing tips of mycelia were transferred by taking plugs with a cork borer (3 mm diameter) from 3 day-old cultures on CM plates to fresh plates of MM with 0, 50, and 100 µM 2DP. MM with 2DP was prepared as described above. The plates were incubated in the dark at 24 • C for 4 days. Five replicates were set up for each strain and for each condition. Average colony diameters of 4 day-old cultures were determined for each strain, and the data were analyzed by ANOVA.

EVALUATION OF FERTILITY
F. graminearum self matings were set up on carrot juice (CJ) medium, as described previously (Oide et al., 2007). For mating, growing mycelial tips were placed in the centers of CJ agar plates, the plates were sealed with parafilm and incubated under continuous black light at 24 • C for 7 days. Approximately 1 ml of sterile 2.5% Tween 60 solution was applied to the plate, and mycelia growing on the plate were knocked down with a rubber policeman, which induced sexual development. Excess Tween 60 solution was discarded and the unsealed plates were incubated under the original conditions for an additional 7 days (Oide et al., 2007).
Fertility was examined based on the number of perithecia per plate and the number of asci per perithecium. At least, five replicates were set up for each self and the number of perithecia per plate was recorded for each plate. At least 20 perithecia were opened for each self and the number of asci was recorded for each perithecium. All data were analyzed by ANOVA.
Fertility of F. graminearum selfs supplied with iron was examined in the same way as described above and previously (Oide et al., 2007). Briefly, a fresh stock solution of ferric citrate (10 mM in water) was applied to carrot juice medium before autoclaving, so that the final concentration was 100, 125, 200 or 250 µM.

EVALUATION OF VIRULENCE
Virulence assays of F. graminearum were carried out as described previously (Oide et al., 2006). At least five independent spikes were inoculated per strain and per assay. In point-inoculation of wheat spikes, local infection, as well as systemic infection, was evaluated. The time required for completion of local infection after inoculation was recorded for each spike. When an inoculated spikelet became completely bleached, local infection was considered finished. At least five spike replicates were set up for each strain, and the average time for completion of local infection was determined for each strain. The data were statistically analyzed by ANOVA. Experiments were repeated at least three times.

ISOLATION, IDENTIFICATION, AND SEMI-QUANTITATIVE ANALYSIS OF F. GRAMINEARUM SIDEROPHORES
Strains were pregrown under iron replete conditions in Fusarium MM made according to the Fusarium Laboratory Manual (Leslie and Summerell, 2006), containing the standard amount of iron (100 ml flasks, 22 • C, 150 rpm). Mycelia from dense 4 day-old cultures were harvested by vacuum filtration using sterile Buchner funnels fitted with sterile filter paper. The mycelia were washed with about 25 ml of iron-free MM, then scraped off the filter paper and transferred to empty Petri dishes. After determination of the wet weight the mycelia were transferred into fresh Fusarium MM without iron. Initially, in all cases, a volume of 6 ml/g wet weight was added during the medium replacement, resulting in cultures with a volume of about 50 ml (±10%). The resuspended cultures were incubated in this iron starvation medium on a rotary shaker at 150 rpm at 22 • C for 3, 6, 11, and 15 days. At harvest, the cultures were first filtered through glass wool to remove the mycelium then clarified by centrifugation to remove any remaining mycelium, including conidiospores formed during cultivation in iron-free medium. FeCl 3 was added to the cleared supernatant (10 mM final), which was centrifuged for 10 min at 12,000 rpm. The supernatants were analyzed with LC-UV-MS. HPLC grade methanol was purchased from J. T. Baker (Deventer, The Netherlands) and formic acid (analytical grade) was obtained from Sigma-Aldrich (Vienna, Austria). Water was purified successively by reverse osmosis and a Milli-Q plus system from Millipore (Molsheim, France). Pure ferricrocin, as well as a mixture containing fusigen, dimerum acid, coprogen, neocoprogens I and II and triacetylfusarinine C (TAFC) were purchased from EMC Microcollections (Tübingen, Germany) and used as qualitative standards.
HPLC separation was carried out on a Gemini-C18 column (4.6 × 150 mm, 5 µm) equipped with a 4 × 3 mm security guard cartridge (both from Phenomenex, Torrance, CA) on an 1100 Series HPLC system (Agilent, Waldbronn, Germany). Eluent A consisted of 5% aqueous methanol with 1% formic acid, while eluent B was 99% methanol with 1% formic acid. After a hold time of 1.5 min at 100% A, the proportion of B was increased linearly to 100% within 10 min, followed by a hold time of 2.5 min at 100% B and 6 min column re-equilibration at 100% A. Total runtime was 20 min at a flow rate of 750 µl/min. The column was kept at 25 • C and an injection volume of 25 µl was used. The diode array detector was set to a wavelength of 435 nm. After the UV detector, the column effluent was transferred via a six-port valve either to the mass spectrometer (between 4 and 14 min) or to the waste. Full scan mass spectra (using Q1) were recorded from m/z 500 to 1200 on a QTrap LC-MS/MS system (Applied Biosystems, Foster City, CA) equipped with a TurboIonSpray ESI source in positive ion mode using Analyst version 1.4.1. The following settings were used for the MS: source temperature 400 • C, curtain gas 25 psi, gas 1 (sheath gas) 30 psi, gas 2 (drying gas) 75 psi, ion spray voltage 5000 V, declustering potential 30 V, scan time 1 s.
High resolution mass spectrometric measurements were performed on a 6550 iFunnel Q-TOF mass spectrometer (Agilent Technologies, Waldbronn, Germany) operated in MS and MS/MS mode. Chromatographic separation was achieved using a Gemini C6-Phenyl C-6 column (2.0 × 50 mm, 3 µm, Phenomenex) using a linear gradient from 5 to 100% methanol, containing 40 mM formic acid and 20 mM ammonium formate.

METABOLITE ANALYSIS
Three and a half decades ago, Emery described the siderophore, malonichrome, produced by a F. roseum strain (ATCC12822) (Emery, 1980). While F. roseum is generally considered as a synonym of F. graminearum, this strain is, in fact, most closely related to F. equiseti based on the nucleotide sequence available for the LSUrDNA D1D2 from the equivalent strain NBRC 8502 (Culture Collection Division of the Biological Resource Center, Japan). The established structure for malonichrome is that of a ferrichrome-type compound, specifically, a cyclic hexapeptide with one alanine, two glycines and three AHOs, in which the hydroxylamino groups are acylated with malonic acid (Emery, 1980).
A big advantage of iron-chelating compounds is their UV absorbance at 435 nm, which renders analytical detection straightforward. A LC-UV chromatogram of the culture supernatant of WT F. graminearum, grown under iron starvation for 6 days, is provided as Figure 1. Concurrent MS analyses of the peak at 8.00 min identified compounds with the mass and sum formula corresponding to malonichrome (after iron supplementation) and desferri-malonichrome (in the absence of iron) (Figures 2A,B). The enhanced resolution scan of the compound with the mass of malonichrome shows clearly that this compound FIGURE 1 | LC-UV chromatogram of wild-type F. graminearum. The fungus was cultivated in liquid MM without iron for 6 days. FeCl 3 was added before measurement of the supernatant at 435 nm. Siderophores present are DAFA, malonichrome, TAFB, and TAFC. * denotes a small interfering peak, also visible in pure solvent.
is able to bind iron. The signal with m/z 885 originates from binding of 54 Fe (making up 6% in naturally occurring isotope mixtures) whereas the main peak with m/z 887 is derived from 56 Fe (92%) and the peak with m/z 888 from 57 Fe (2%). LC-HR-MS measurements yielded the highest intensity at m/z 887.2244 for the [M+H] + ion of the ferri-form. This confirms the sum formula of C 31 H 44 FeN 9 O 18 with a deviation from the theoretical mass of +1.4 ppm (Figure 2A). For the desferri-form m/z values of 834.3105 ( +0.9 ppm), 851.3375 ( +0.2 ppm) and 856.2925 ( +0.7 ppm) have been found, which match the protonated ion, the ammonium adduct and the sodium adduct of C 31 H 47 N 9 O 18 , respectively ( Figure 2B). Also the collision induced dissociation pattern in LC-MS/MS experiments ( Figure 2C) is consistent with the structure proposed by Emery (1980). Cleavage of carbon dioxide from the three malonic acid ester (MA) groups, cleavage of the respective MA groups as well as cleavage of one or both AHO (including MA) groups from the molecule can be explained from the MS/MS spectrum. We therefore conclude that the compound identified in F. graminearum is malonichrome. As evident from Figure 3, malonichrome is missing in samples of all mutants lacking NPS1 (nps1, nps1nps2, nps1nps6 and the triple mutant nps1nps2nps6), demonstrating, formally, that the NPS1 gene is required for malonichrome biosynthesis.
In agreement with our previous publication (Oide et al., 2007), ferricrocin was missing in samples of all mutants carrying a deletion of NPS2 (Figure 3). Unexpectedly, however, we detected ferricrocin in the culture supernatant of WT, at later time points (after 11 days of iron starvation; not visible in Figure 1), indicating that this "intracellular siderophore" is not as strictly intracellular as previously thought. Furthermore, the supernatant of the nps1nps6 mutant which is expected to produce only ferricrocin, had an approximately 2X increase in ferricrocin accumulation compared to WT (Figure 3). Figure 3 also shows early accumulation of TAFC and transient formation of its derivatives triacetyfusarinine B (TAFB) and diacetylfusarinine A (DAFA) with hydrolyzed ester bonds. As noted by Emery for F. roseum (Emery, 1980), we observed a switch from production of the ester type fusarinines to the peptide type siderophore malonichrome as the major extracellular siderophore for WT F. graminearum after extended culture. Interestingly, production of TAFC and the hydrolysis product TAFB was maintained longer in the mutant lacking the other two siderophores (nps1nps2).

GROWTH AND SENSITIVITY TO ROS AND IRON DEPLETION
Single, double, and triple mutant strains ( Table 1) were used to perform phenotypic tests. Single gene deletions of either NPS1 or NPS2 do not affect tolerance to oxidative stress mediated by H 2 O 2 and KO 2 as described previously (Oide et al., 2007). Likewise, nps1nps2 strains show WT tolerance. Deletion of NPS6, however, compromises tolerance to both types of ROS (Oide et al., 2006). nps1nps6 strains showed nps6-like sensitivity to ROS, while double deletion of NPS2 and NPS6 further increased sensitivity to H 2 O 2 and KO 2 compared to nps6 strains ( Table 2). Triple nps1nps2nps6 mutant strains were indistinguishable from double nps2nps6 mutant strains in terms of sensitivity to H 2 O 2 (see Table 2 for MICs). Similarly, there was no difference in MIC of KO 2 to nps2nps6 and nps1nps2nps6 strains, when sensitivity to 3, 6, 12, and 24 mM KO 2 was examined. A subtle reduction in Siderophores produced by WT Gz3639 and mutant strains (see Table 1) cultivated in MM and subsequently starved in iron-free MM as described in Materials and Methods. Samples were taken 3, 6, 11, and 15 days after shift to iron-starvation medium. Supernatants were analyzed for siderophores by HPLC as described in the Materials and  growth, however, was observed for the latter strain on MM with 3 mM KO 2 compared to the former (data not shown). When examined on MM with 3.5, 7, 14, and 28 mM KO 2 , MIC of KO 2 to nps1nps2nps6 strains was 3.5 mM, while that of nps2nps6 strains was 7 mM (Table 2), indicating that deletion of NPS1 enhances the sensitivity of nps2nps6 strains to KO 2 . These observations allow the conclusion that NPS1 and NPS2 contribute to oxidative stress tolerance. nps1, nps2, as well as nps1nps2 strains show the same tolerance to iron depletion as the WT strain, whereas nps6 strains are compromised in growth under low iron conditions. Judged by MICs of 2DP, no difference in sensitivity to iron depletion was observed among nps6, nps1nps6, nps2nps6, and nps1nps2nps6 strains ( Table 2). Nevertheless, a reduction in growth on MM with 100 µM 2DP was observed for the latter three compared to nps6 strains (Figure 4A), and growth of nps1nps2nps6 strains was most severely affected. As previously published (Oide et al., 2006), nps6 strains have a growth defect on MM due to starvation for iron, and exogenous application of iron restores WT growth to nps6 strains ( Figure 4B). When cultured on MM, growth of nps1nps6, nps2nps6, and nps1nps2nps6 strains was reduced to the same extent as observed for nps6 strains (Figure 4B). Iron-dependent restoration of growth was observed for nps2nps6 strains but not for nps1nps6 strains. Moreover, increasing concentrations of iron further attenuated growth of nps1nps2nps6 strains, suggesting that the strains are hypersensitive to iron overload. Overall, these results indicate that NPS1 is involved in iron metabolism of F. graminearum.

SEXUAL REPRODUCTION
Earlier we reported that nps2 strains of self-compatible F. graminearum (G. zeae) are defective in ascus/ascospore development, although they show WT perithecium development. In contrast, nps1 and nps6 deletion strains are not affected in sexual development. nps1nps2 strains are like nps2 strains in terms of fertility (Oide et al., 2007).
When the nps1 deletion was combined with the nps6 deletion, nps1nps6 strains were as fertile as WT strains, indicating Error bars indicate 95% confidence intervals. A statistically significant reduction in growth on MM with 100 µM 2DP was observed for the nps2nps6 and nps1nps6 strains, compared to the nps6 strain. The nps1nps2nps6 strains show further reduced growth on MM with 100 µM 2DP, compared to the nps2nps6 or nps1nps6 strains. No significant difference in growth was observed on MM among all strains. (B) Application of iron enhances growth of nps6 and nps2nps6, but not nps1nps6 and nps1nps2nps6 strains. Average colony diameters of 5 day-old cultures of WT (strain Gz3639), nps6 (strain Fgnps6G-1), nps2nps6 (Gznps2-6-1nps6-17), nps1nps6 (Gznps1-5-1nps6-3-1), and nps1nps2nps6 (Gznps2-6-1nps1-5-1nps6-3-2) strains on MM with/without iron are shown. Error bars indicate 95% confidence intervals. A statistically significant reduction in growth on MM was observed for all mutant strains compared to WT. Application of 200 or 400 µM ferric citrate restored WT growth to the nps6 and nps2nps6 strains, indicating that the growth defect of these strains on MM is due to iron deficiency. In contrast, application of iron did not enhance growth of the nps1nps6 strains. Application of 400 µM ferric citrate reduced growth of the nps1nps2nps6 strains, implying that they are hypersensitive to iron overload.
that NPS1 and NPS6 are dispensable for sexual development in the presence of NPS2 (Figures 5A,B). Double nps2nps6 mutants formed perithecia that were WT in number and in morphology when selfed (Figure 5A  strains, showed defects in ascus development (Figure 5A top, right). However, in contrast to perithecia developed by nps2 strains, in which immature ascus-like structures are often observed (note Figure 5B, top right, arrows), perithecia developed by nps2nps6 strains were devoid of any ascus-like structures (Figure 5B bottom, left). Application of iron restored ability to develop asci and ascospores to both types of strain, but there were fewer asci per perithecium in the nps2nps6 compared to the nps2 selfs (Figures 5C,D). Taken together, these results indicate that iron metabolism during sexual development is impaired more severely in nps2nps6, compared to nps2 strains. Although single nps1 or double nps1nps6 strains did not show any defect in sexual reproduction, triple deletion nps1nps2nps6 FIGURE 5 | Nps2 is required for sexual reproduction of self-compatible strains but Nps6 plays a role when Nps2 is absent. (A) nps2nps6 and nps1nps6 strains form perithecia as well as WT strains do. Top and bottom, left, average number of perithecia per plate is shown for WT, nps2 (2), nps2nps6 (26), and nps1nps6 (16) selfs. Ten replicates were set up for each strain. Error bars indicate 95% confidence intervals. No significant difference was observed in the number of perithecia per plate between WT, and any of the mutant strains. Top, right, nps2nps6 strains fail to develop asci and ascospores. WT, nps2, and nps2nps6 selfs are shown. As observed in nps2 strains, nps2nps6 strains fail to develop asci and ascospores. Bottom, right, nps1nps6 strains are as fertile as WT. Average number of asci per perithecium is shown for WT and nps1nps6 selfs. Thirty perithecia were opened for each self. Error bars indicate 95% confidence intervals. No significant difference was observed in the number of asci per perithecium between WT and nps1nps6 selfs. (B) nps2 strains which develop immature ascus-like structures (II, arrows), however no ascus-like structures were found in perithecia developed in the nps2nps6 selfs (III, arrows), indicating that sexual development of the nps2nps6 strain is more severely affected than that of the nps2 strain.
nps1nps6 strains are as fertile as WT (compare I and IV). Magnification is × 200, inserts × 500. (C) nps1nps2nps6 strains are more affected in sexual development than nps2nps6 strains. Application of iron restores ability to develop asci and ascospores to nps2, nps2nps6, and nps1nps2nps6 strains. Five replicates were set up for each self and for each condition. A statistically significant reduction in the number of perithecia per plate was observed in the nps1nps2nps6 selfs, compared to WT, nps2, and nps2nps6 selfs. Exogenous application of iron enhanced perithecium development of the nps1nps2nps6 selfs, indicating that reduced perithecium development is due to iron deficiency. When iron is applied, a reduction in perithecium development was observed in WT selfs. (D) Twenty perithecia were opened for each self and for each condition. Error bars indicate 95% confidence intervals. Although no statistically significant difference was observed in the number of asci per perithecium between the nps2nps6 and nps1nps2nps6 selfs, the number tended to be smaller in the nps1nps2nps6 compared to the nps2nps6 selfs. A statistically significant difference in the number of asci per perithecium was observed between the nps2 and nps2nps6 strains, further demonstrating that nps2nps6 strains are more affected in sexual development.

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January 2015 | Volume 5 | Article 759 | 9 strains showed a reduction in the number of perithecia developed in selfs, compared to the WT, nps2, or nps2nps6 selfs ( Figure 5C; Table 3). As observed for the nps2nps6 selfs, the perithecia developed in the nps1nps2nps6 selfs had WT morphology but lacked any ascus-like structures (not shown). When iron was applied exogenously, the nps1nps2nps6 selfs formed as many perithecia as the nps2 or nps2nps6 selfs (Figure 5C), indicating that reduced perithecium development of the nps1nps2nps6 selfs is attributable to iron deficiency. Application of iron also restored ability to form asci and ascospores to nps1nps2nps6 strains (Figure 3D), but the number of asci/perithecium of the nps1nps2nps6 selfs was less than that of the nps2 selfs ( Figure 3D). No statistically significant difference between the nps2nps6 and nps1nps2nps6 selfs was observed in the number of asci/perithecium, although the number of asci tended to be less in the latter compared to the former.
The observations indicate that NPS1 plays a role in maintaining iron homeostasis during sexual development.

VIRULENCE
Deletion of NPS6 impairs virulence of F. graminearum to wheat (Oide et al., 2006), whereas nps1, nps2, nps1nps2 strains retain WT virulence to the host (data not shown). A subtle reduction in virulence was observed for nps2nps6 strains, compared to nps6 strains (Figure 6, compare second from left wheat head sets with second from right sets). Generally, nps2nps6 strains took longer to complete local infection than did nps6 strains, although variation was observed among individual infection events (Figure 7). Reduced virulence of nps2nps6 strains was also observed in systemic infection. In general, the spikes challenged by nps2nps6 strains were less damaged than those challenged by nps6 strains (Figure 6A). Similarly, kernels in spikes infected by nps2nps6 strains (Figure 6B, second from right) were less damaged compared to those in spikes infected by nps6 (Figure 6B, second from left) or WT strains (Figure 6B, left). Again, some variation in severity of symptom was observed among individual spikes challenged by the nps6 and nps2nps6 strains. Like nps6 strains, nps1nps6 strains showed reduced virulence to wheat (Figures 6A,B, 7), however, no significant difference was observed between these strains in either local or systemic infection of wheat. The triple mutant nps1nps2nps6 strain almost completely lost virulence to wheat. In point-inoculation assays of spikes, nps1nps2nps6 strains developed moderate symptoms only occasionally (Figures 6A,B, right image sets). Generally, about 80% of the spikes inoculated with the nps1nps2nps6 strain were asymptomatic, even though the spikes were incubated up to 16 days post-inoculation. These data demonstrate that simultaneous deletion of NPS1, NPS2 and NPS6 in F. graminearum leads to further attenuated virulence on wheat, compared to nps2nps6 strains.

MALONICHROME PRODUCTION REQUIRES NPS1
We demonstrate here that, in addition to the ferricrocin (intracellular) and TAFC (extracellular) trihydroxamate siderophores biosynthesized by the Nps2 and Nps6 proteins, F. graminearum produces a second extracellular siderophore, malonichrome, described in 1980 as an extracellular siderophore of F. equiseti (F. roseum). Biosynthesis of this siderophore did not occur in mutants with disruptions of the NPS1 gene (Figure 3), thus the function of Nps1 can definitively be assigned. Previously, we proposed that the F. graminearum Nps1 protein may be partially functional and able to produce dihydroxamates, but not trihydroxamates (Oide et al., 2007). This hypothesis was falsified by our current experiments.

MALONICHROME PLAYS A ROLE IN IRON HOMEOSTASIS
Phenotypic characterization of nps1nps6 and nps1nps2nps6 strains implicates malonichrome in iron management in F. graminearum. Although no difference was observed in terms of MIC of 2DP, a reduction in growth was observed for nps1nps6 strains compared to nps6 strains in the presence of 100 µM 2DP. When cultured on MM, growth of nps6 and nps1nps6 strains was reduced to a similar extent compared to WT. In contrast to nps6 strains, where WT growth is restored by iron (Oide et al., 2006), growth of nps1nps6 strains was unaffected by exogenous application of iron, suggesting that malonichrome contributes to iron acquisition of F. graminearum in the absence of NPS6. This idea is further supported by the observation of nps1nps2nps6 strains, which showed a subtle but reproducible increase in sensitivity to 2DP compared to nps2nps6 strains. A sexual development phenotype unique to nps1nps2nps6 strains was also observed. In selfs of these strains, a reduction in the number of perithecia was observed, in addition to complete sterility in terms of ascus/ascospore development. The reduction in numbers of perithecia was not observed in any other mutant strain, including nps2, nps1nps2 (Oide et al., 2007), and nps2nps6 strains. Application of iron facilitated perithecium formation of nps1nps2nps6 strains, indicating that starvation for iron accounts for the developmental defect. Overall, our findings provide evidence that malonichrome produced by Nps1 is involved in iron metabolism during reproductive as well as vegetative development of F. graminearum.

EXTRACELLULAR SIDEROPHORES PRODUCED BY NPS6 ARE OF PRIMARY IMPORTANCE FOR IRON ACQUISITION
Here we show that the primary extracellular siderophore, which depends on an intact NPS6 gene, is TAFC, a cyclic peptide FIGURE 6 | Virulence of WT, nps6, nps1nps6, nps2nps6, and nps1nps2nps6 strains to wheat. (A) Wheat spikes challenged by WT (strain Gz3639), nps6 (strain Fgnps6G-1), nps1nps6 (strain Gznps1-5-1nps6-3-1), nps2nps6 (strain Gznps2-6-1nps6-17), and nps1nps2nps6 (strain Gznps2-6-1nps1-5-1nps6-3-2), strains, 16 days after inoculation. Spikes inoculated with the nps2nps6 strain (second set from right) are less damaged than those inoculated with the nps6 strain (second set from left). Spikes inoculated with the nps1nps6 strain (middle set) were as severely damaged as those inoculated with nps6 strains. Spikes inoculated with the nps1nps2nps6 strain (right set) show further reduced virulence compared to the nps2nps6 strain and were almost intact. (B) Kernels taken from the spikes shown in (A). Relative positions of kernels correspond to those of the spikes shown in (A). Generally, spikes challenged by nps2nps6 strains contained more healthy, green kernels (note tops of spikes) than did those challenged by nps6 strains, demonstrating that the nps2nps6 strain is more reduced in virulence for systemic infection of wheat spikes, than the nps6 strain is. Kernels in the spikes infected by the nps1nps6 strains were as severely damaged as those in the spikes infected by the nps6 strain. Most of the kernels in the spikes infected by the nps1nps2nps6 strains appeared undamaged. Overall, these data demonstrate that the nps1nps6 strain is as virulent to wheat spikes as the nps6 strain is, and that the nps1nps2nps6 strain is further attenuated in virulence to wheat spikes, compared to the nps2nps6 strain.
consisting of three N 5 -cis-anhydromevalonyl-N 5 -hydroxy-N 2acetyl-l-ornithine residues linked by ester bonds. TAFC binds iron with very high affinity. In order to be able to transfer the tightly bound iron to other carriers (including the intracellular siderophore), the molecule has to be successively destroyed by hydrolysis of the ester bonds (Haas, 2014). We detected the linearized derivative (TAFB) generated by opening of one ester bond in TAFC, and the cleavage product (DAFA) generated by opening two ester bonds and loss of one N 5 -cis-anhydromevalonyl-N 5 -hydroxy-N 2 -acetyl-l-ornithine unit (see Figure 3). In agreement with the proposed product/precursor relationship, all of these metabolites depended on the presence of the NPS6 gene (Figure 3). With increasing incubation time under iron depletion conditions, TAFC and its hydrolysis products were replaced by malonichrome in WT and even more pronounced in nps2 strains. The biological significance of this shift remains a matter of future research. As already pointed out by Emery (1980), malonichrome is less efficient in mediating iron uptake than TAFC in F. roseum/equiseti. Given that the impact of nps1 deletion is apparent only in the absence of NPS6, this seems to be the case also for F. graminearum.

FERRICROCIN AN EXTRACELLULAR SIDEROPHORE?
The ferrichrome type siderophore, ferricrocin is generally considered to be an intracellular siderophore. Yet, we observed ferricrocin in culture filtrates of WT as well as nps1nps6 mutants that still carried the WT NPS2 gene. Thus, designation of ferricrocin as strictly intracellular appears to be an oversimplification. Although ferricrocin is generally recognized as an intracellular siderophore in A. fumigatus, trace amounts can be detected in culture supernatants (Schrettl et al., 2007). The mutualistic grass endophyte Epichloë festucae sidN gene encodes a siderophore synthetase producing a novel extracellular ferrichrome-type siderophore, epichloënin A (Koulman et al., 2012). Also for S. pombe, which contains only one siderophore biosynthesis gene in its genome (Bushley et al., 2008), the resulting hydroxamate-type  (26) strains. Note that the nps1nps2nps6 strain was not included, as most of the spikelets inoculated with the nps1nps2nps6 strains were asymptomatic until the end of infection assays (i.e., 16 days after inoculation). No significant difference was observed in the time for local infection between the nps6 and nps1nps6 strains, indicating that the nps1nps6 strain is as virulent for local infection of wheat spikes as the nps6 strain is. Generally, it takes longer for the nps2nps6 strain to complete local infection, compared to the nps6 strain.
siderophore, ferrichrome, is accumulated both intracellularly and excreted (Schrettl et al., 2004). An obvious question is if the F. graminearum secreted ferricrocin can act as an extracellular siderophore or not. Exogenous application of ferricrocin restores the WT fertility to nps2 strains (Oide et al., 2007) indicating that F. graminearum can take up ferricrocin from extracellular spaces. However, our observation on nps1nps6 strains casts doubt on the contribution of extracellular ferricrocin to iron uptake. Although this mutant accumulates increased amounts of extracellular ferricrocin compared to other strains, iron supplied exogenously failed to mitigate the growth defect of the nps1nps6 mutant on MM. Iron needs to be released from siderophores after entering fungal cells. Due to its property as an iron storage molecule, ferricrocin iron release may be strictly regulated, and therefore iron bound to ferricrocin may not be a good source of nutritional iron.
Overall, these findings confirm the previous conclusion that TAFC and its derivatives, the primary extracellular siderophores, play a pivotal role in iron acquisition and infection of the plant host.

EXTRACELLULAR SIDEROPHORES PLAY A ROLE IN IRON METABOLISM DURING SEXUAL DEVELOPMENT
nps1, nps6, and nps1nps6 strains are like WT in terms of sexual development, demonstrating that fusarinines and malonichrome are dispensable for sexual reproduction in the presence of ferricrocin. When ferricrocin synthesis is abolished by deletion of NPS2, extracellular siderophore can partly compensate for the lack of intracellular siderophores, as evidenced by the more pronounced defect in ascus/ascospore development and reduced perithecium formation of nps1nps2nps6 strains compared to nps2 strains. For this compensatory role for ferricrocin, fusarinines are apparently more important than malonichrome. nps2nps6 strains are more severely impaired in ascus/ascospore development compared to nps2 strains, whereas nps1nps2 strains are indistinguishable from nps2 strains.

HOW ARE INTRACELLULAR SIDEROPHORES INVOLVED IN FUNGAL VIRULENCE TO PLANT HOSTS?
Loss of intracellular siderophore biosynthesis alone does not affect virulence of F. graminearum, C. heterostrophus, A. brassicicola, or U. maydis to each host (Yuan et al., 2001;Oide et al., 2007). A study on Magnaporthe oryzae, on the other hand, demonstrated the essential role of intracellular siderophores in virulence to rice (Hof et al., 2007). In the present study, we found that intracellular siderophores play a role in fungal infection of wheat in the absence of NPS6. nps1nps2nps6 strains are more severely impaired in virulence to the host than are nps2nps6 strains and both are more severely impaired in virulence than nps6 and nps1nps6 strains. How are siderophores inside fungal cells involved in virulence to plants? As discussed, ferricrocin by itself is not likely to contribute to acquisition of extracellular iron nutrient, though it is detectable in extracellular spaces.
Previous studies, including our own, demonstrated that intracellular siderophores have roles in certain types of fungal development such as asexual and sexual sporulation (Eisendle et al., 2003(Eisendle et al., , 2006Oide et al., 2007). Hence, intracellular siderophores may play a role in pathogenesis-related development. WT virulence of nps2 strains to wheat, however, questions the hypothesis. It has been well documented that iron can be a toxic substrate as well as an important nutrient. In the presence of H 2 O 2 or superoxide, intracellular free iron (labile iron) generates highly cytotoxic hydroxyl radicals through the Haber-Weiss/Fenton reaction, and thus, tight regulation of the labile iron pool is critical for aerobic organisms. Iron bound to siderophores does not readily participate in this reaction, hence intracellular siderophores have been proposed to play a role in control of intracellular labile iron pool, in addition to their role in storage of iron nutrient. A study on the F. graminearum sid1 mutant, however, negates this proposed role (Greenshields et al., 2007). Deletion of SID1, encoding a L-ornithine N 5 -oxygenase, leads to reduction in labile iron pool under iron-replete conditions compared to WT, indicating that loss of intracellular siderophore synthesis is not likely to promote the Haber-Weiss/Fenton reaction. The finding is in agreement with recent work on A. fumigatus, which reports that the major iron detoxification mechanism of this fungus is vacuolar iron storage mediated by the iron transporter CccA but not siderophore-dependent iron sequestration (Gsaller et al., 2012). These observations suggest that the role of ferricrocin as a virulence determinant of F. graminearum is unrelated to regulation of labile iron pool.
In A. fumigatus, blockage of extracellular siderophore synthesis at different steps has distinct consequences in terms of tolerance to iron depletion and virulence to mice (Schrettl et al., 2007). Deletion of the NPS6 ortholog SidD results in more pronounced defects compared to the sidF mutant, in which acylation of N 5hydroxy-L-ornithine is hampered. We found a similar discrepancy between C. heterostrophus nps2nps6 and sidA mutants, both of which completely lack siderophore synthesis. The nps2nps6 mutant is more compromised in stress tolerance and virulence to maize compared to the nps6 mutant (Condon et al., 2014), whereas deletion of SidA, encoding a L-ornithine N 5 -oxygenase, leads to the nps6-like phenotype (Oide and Turgeon, unpublished). A subtle difference in virulence to wheat is suggested also between F. graminearum nps1nps2nps6 and sid1 strains. According to the report, the sid1 mutant is able to initiate WTlike infection within the inoculated spikelet, but fails to spread from spikelet to spikelet (Greenshields et al., 2007). In the case of nps1nps2nps6 strains, most attempts of local infection are unsuccessful. Although direct comparison between these two strains has not been carried out, the observations suggest that virulence of the nps1nps2nps6 mutant is more severely affected than the sid1 mutant. Schrettl et al. (2007) proposed possible toxicity of intermediate metabolites as an interpretation of their observation on A. fumigatus. As external iron supply can cure the defects of both sidD and sidF mutants, the toxicity is likely related to iron deficiency. A study on A. fumigatus sidC shows that loss of intracellular siderophore synthesis provokes accumulation of extracellular siderophore breakdown products, which can chelate iron in vivo (Gsaller et al., 2012), indicating that intracellular siderophores play a role in sequestration of iron from siderophore breakdown products. In analogy, ferricrocin may retard binding of the precursors of siderophore synthesis to iron resulting in iron Although the domain structures of F. graminearum (Fg) Nps1 and A. nidulans (An) SidC proteins are very similar, different products are generated (malonichrome and ferricrocin, respectively). In contrast, the domain structures of F. graminearum and C. heterostrophus (Ch) Nps2 proteins are different, but the same metabolite is formed (ferricrocin). White numbered boxes symbolize condensation domains. Arrows indicate orthologous domains (Bushley et al., 2008). deficiency in F. graminearum, under the assumption that these metabolites show affinity to iron. The more pronounced defect in virulence to wheat of the nps2nps6 mutant compared to the nps1nps6 mutant is consistent with the hypothesis. The increased level of fusarinines and malonichrome in nps2 strains compared to WT suggests that iron chelation by the metabolic intermediates is compensated by enhanced iron uptake, accounting for WT virulence of nps2 strains to the host.

STRUCTURAL ASPECTS OF THE NPS1 AND NPS2 PROTEINS
Both ferricrocin and malonichrome are produced by combining three AHO units with amino-acids to produce a cyclic hexapeptide ( Figure 8A). The amino acid between the two glycines in the structure is different; in malonichrome, it is alanine, and in ferricrocin it is serine. A major difference in structure is also found in the decoration of N-hydroxy-ornithine by N-acylation. Malonichrome contains N-hydroxy-ornithine residues aminoacylated with malonate, while in ferricrocin these are acetylated ( Figure 8A). An N 5 -hydroxyornithine:acetyl-CoA-N 5 -transacylase (SidL) has been identified in Aspergillus (Blatzer et al., 2011). The corresponding F. graminearum gene FGSG_10426 is not part of the ferricrocin cluster (C33 cluster (FGSG_16474 -FGSG_05374). Interestingly, a gene, FGSG_11027, immediately upstream of NPS1 (FGSG_11026) is a conserved hypothetical protein with a predicted acyl-CoA Nacyltransferase interpro motif (IPR016181). It is co-regulated with NPS1 as part of the secondary metabolite gene cluster C63 (Sieber et al., 2014). The hypothesis that this may be the relevant malonyltransferase for malonichrome biosynthesis remains to be tested. NPS1, in contrast to NPS2, is clustered with putative transporter proteins, in agreement with its role as an extracellular siderophore.
From an evolutionary perspective, the genes encoding NRPSs for biosynthesis of ferrichrome type siderophores are among the most conserved NPS genes across the fungi (Bushley and Turgeon, 2010;Ohm et al., 2012). Despite this conservation, the NPS1 and NPS2 genes though related, are in distinct evolutionary lineages, likely due to an ancestral gene duplication (Bushley et al., 2008). While each encodes an NRPS protein with 3 adenylation domains, Nps2 has 6 condensation domains while the Nps1 protein has 5 ( Figure 8B). Interestingly, although there are differences in the predicted order of domains (Bushley et al., 2008) between the C. heterostrophus and the F. graminearum Nps2 proteins, both catalyze the production of ferricrocin. In contrast, the F. graminearum Nps1 and the A. nidulans SidC proteins are structurally very similar with a conserved domain order, yet produce malonichrome and ferricrocin, respectively. The differences in amino-acids (alanine vs. serine) were predicted from protein modeling in the first two adenylation domains. The AHO domains were predicted by size of substrate considerations (Bushley et al., 2008) and it is not apparent that one would accept exclusively the acidic malonate conjugate or the neutral acetylated N-hydroxy-ornithine derivative.

SIDEROPHORES AS PAMPs?
As evident from the nearly complete loss in virulence of triple mutants, siderophores are needed to fetch iron from the host.
The host strategy of withholding iron to limit pathogen growth is well documented in animal systems (Cassat and Skaar, 2013) and also can be an important aspect of plant defense in some cases (Expert, 1999;Nairz et al., 2010). Obviously reductive iron transport which sustains life of the triple nps1nps2nps6 mutants is insufficient to support growth of the pathogen in planta.
It is unclear what the advantage of having two different types of extracellular siderophores is for F. graminearum, and whether the shift to a less efficient siderophore (Emery, 1980) can provide a selective advantage. Evolutionary conserved pathogen-derived proteins/molecules, so called pathogen-associated molecular patterns (PAMPs), serve as targets for host surveillance systems (Segonzac et al., 2011;Monaghan and Zipfel, 2012). Studies on the phytopathogenic bacterium Erwinia chrysanthemi report that siderophores produced by the bacterium trigger host defense responses (Dellagi et al., 2005). Recent work shows that a fungal siderophore from the hemibiotroph Colletotrichum graminearum also activates plant immune responses (Albarouki et al., 2014). One hypothesis is that TAFC, an evolutionary optimized and conserved siderophore is recognized as a PAMP by host plants (Adam et al., 2015). Biosynthesis of a different type of extracellular siderophore might be an outcome of the host-pathogen evolutionary "arms" race, in the same way evolving/acquiring novel effectors is. Yet, even if this scenario is valid, loss of the NPS6 gene and of ability to produce the high affinity TAFC has an associated high fitness price that can at best be partly compensated by malonichrome.