Autoantigen-Induced Focusing of Vβ13+ T Cells Precedes Onset of Autoimmune Diabetes in the LEW.1WR1 Rat

The earliest events leading to autoimmune type 1 diabetes (T1D) are not known in any species. A T-cell receptor (TCR)-variable region, TCR-Vβ13, is required for susceptibility to autoimmune diabetes in rats, and selective depletion of Vβ13+ T cells with an allele-specific monoclonal antibody prevents disease in multiple rat strains. To investigate the role of Vβ13 early in diabetes, we examined islet T-cell transcripts in susceptible (LEW.1WR1) and resistant (LEW.1W and Wistar Furth) strains induced with polyinosinic:polycytidylic acid. Vβ13+ T cells displayed antigenic focusing in LEW.1WR1 islets 5 days postinduction and were characterized by a substantial decrease in complementarity determining region 3 diversity. This occurred prior to significant islet T-cell accumulation (day 7) or frank diabetes (days 10–14). Vβ13+ transcripts increased in LEW.1WR1 islets during diabetes progression, but not in resistant rats. We also analyzed transcript clonality of rat TCR-Vα5, an ortholog of the dominant TCR-Vα chain found on insulin B:9-23–reactive T cells in nonobese diabetic rat islets. We observed clonal expansion of Vα5+ transcripts in prediabetic LEW.1WR1 islets, suggesting that rat Vα5 is also an important component of islet autoantigen recognition. These data provide additional evidence that genome-encoded TCR sequences are important determinants of genetic susceptibility to T1D.

The earliest events leading to autoimmune type 1 diabetes (T1D) are not known in any species. A T-cell receptor (TCR)-variable region, TCR-Vb13, is required for susceptibility to autoimmune diabetes in rats, and selective depletion of Vb13 + T cells with an allele-specific monoclonal antibody prevents disease in multiple rat strains. To investigate the role of Vb13 early in diabetes, we examined islet T-cell transcripts in susceptible (LEW.1WR1) and resistant (LEW.1W and Wistar Furth) strains induced with polyinosinic: polycytidylic acid. Vb13 + T cells displayed antigenic focusing in LEW.1WR1 islets 5 days postinduction and were characterized by a substantial decrease in complementarity determining region 3 diversity. This occurred prior to significant islet T-cell accumulation (day 7) or frank diabetes (days [10][11][12][13][14]. Vb13 + transcripts increased in LEW.1WR1 islets during diabetes progression, but not in resistant rats. We also analyzed transcript clonality of rat TCR-Va5, an ortholog of the dominant TCR-Va chain found on insulin B:9-23-reactive T cells in nonobese diabetic rat islets. We observed clonal expansion of Va5 + transcripts in prediabetic LEW.1WR1 islets, suggesting that rat Va5 is also an important component of islet autoantigen recognition. These data provide additional evidence that genome-encoded TCR sequences are important determinants of genetic susceptibility to T1D. Type 1A diabetes (T1D) is an autoimmune disease characterized by T cell-mediated destruction of insulin-producing pancreatic b-cells. T1D is thought to arise through the interaction of genetic and environmental factors, with progressive loss of b-cells occurring over months to years in the presence of circulating islet autoantibodies; clinical diabetes occurs after ;80% of insulin secretory capacity is lost. Because T1D typically develops over the course of years, and because tissue biopsy is not possible, little is known about early events that underlie T1D. There are no proven therapeutics to prevent, halt, or reverse established diabetes (1), and thus a better understanding of disease onset and progression is necessary.
We have developed rat models of diabetes with no or low incidence of spontaneous disease in which immune perturbation induces diabetes. Inducible animal models (e.g., LEW.1WR1 rats) demonstrate autoimmune pathology that reproduces human disease with considerable fidelity (2,3). We have taken advantage of these models to study early events in diabetes pathogenesis and its genetic control.
T1D is common in inbred rat strains with a high-risk MHC-II haplotype (RT1.B/D u ). We previously reported that Iddm14 is a dominant rat diabetes susceptibility locus (4)(5)(6) harboring T-cell receptor (TCR) b-chainvariable region (TCR-Vb) genes. An allele of one TCR-Vb gene (TcrbV13S1A1) is expressed in six diabetessusceptible RT1.B/D u rat strains (including LEW.1WR1), whereas three strains that are resistant to, or confer resistance to, diabetes express either TcrbV13S1A2 (e.g., Wistar Furth [WF]) or the nonfunctional TcrbV13S1A3P (F344) gene (7). These polymorphisms are of interest because preferential usage of the TcrbV13S1A1 allelic gene product, termed TCR-Vb13a, by CD4 + but not CD8 + cells has been reported (8). We confirmed that the gene encoding TCR-Vb13 is Iddm14 when we prevented both induced (polyinosinic:polycytidylic acid [poly I:C] or poly I:C + Kilham Rat Virus) and spontaneous diabetes by depleting TCR-Vb13a + T cells with an allele-specific monoclonal antibody (17D5) (9).
In addition, substantial evidence indicates that insulin is a key autoantigen recognized by islet-infiltrating T cells in mice and in people (10,(19)(20)(21). Consistent with this view, the insulin B:9-23 epitope binds weakly to I-A g7 , limiting thymic negative selection of insulin-reactive T cells (22)(23)(24). RT1.Bb u in rats also encodes Serb57, suggesting that similar binding affinities could apply to the RT1:insulin peptide complex.
Furthermore, our genetic studies in rats and the work of others on diabetogenic T cells in mice (21,25) led us to conclude that germline-encoded elements of the TCR (complementarity determining region [CDR] 1 and CDR2) are critical for recognition of autoantigen + MHC (21,26). This implies that genomically encoded elements in the TCR-variable chain region (CDR1 and CDR2) are critical determinants of autoimmunity, predisposing certain T cells to recognize islet autoantigens. This in turn suggests that targeting T cells expressing those elements can be used, as we have shown, to prevent autoimmune diabetes (9).
Diabetes induction in LEW.1WR1 rats is welldocumented (2), but little is known about the timing of islet T-cell infiltration during progression to diabetes or the temporal incidence of islet autoimmunity. In the current study, we hypothesized that if Vb13a is required for the development of diabetes in LEW.1WR1 rats, then Vb13a + T cells should accumulate early in the prediabetic islet and display antigen-specific clonal expansion.
Additionally, we tested the hypothesis that Iddm14 is required for the initiation of diabetes in LEW.1WR1 rats, whereas Iddm37 modifies disease progression. If only Iddm14 is required for disease initiation, then we would predict that Vb13a + T cells will infiltrate LEW.1WR1 and LEW.1W islets. Conversely, if the expression of a permissive allele at Iddm37 were required prior to islet T-cell infiltration, then we should not observe islet infiltration in LEW.1W or WF rats.
We analyzed the timing of islet T-cell infiltration and anti-islet autoimmunity by T cells bearing critical germline-encoded TCR elements (Vb13a and Va5). We conclude that Vb13a + T cells are a critical component of the diabetogenic trimolecular complex; they display isletspecific clonal expansion and increase in abundance throughout diabetes progression. Furthermore, Iddm37 modifies disease progression in LEW.1W rats by delaying and dampening islet infiltration of diabetogenic Vb13a + T cells, minimizing overall islet infiltration and preventing disease.

Animals
LEW.1WR1 and LEW.1W rats were obtained from BRM (Worcester, MA). WF rats were purchased from Harlan Laboratories (Dublin, VA). Animals were housed at Drexel University College of Medicine or the University of Massachusetts in viral antibody-free conditions, confirmed monthly to be serologically free of rat pathogens, and maintained in accordance with institutional and national guidelines. No differences in the incidence or latency of diabetes induced in these rat strains have been observed at the two sites.

Diabetes Induction
Spontaneous diabetes incidence in LEW.1WR1 rats is ;2.5%. Treatment with poly I:C, 1 mg/g i.p. three times weekly, increases diabetes frequency to ;100% (2). Poly I:C is a ligand of Toll-like receptor 3 and IFIH1 (interferon induced with helicase C domain 1, also known as MDA5). WF rats are resistant to diabetes induction both at this dose and much higher doses (27). Diabetes was induced in rats of either sex starting at 21-28 days of age with poly I:C (Sigma, St. Louis, MO). All rats were injected intraperitoneally with 1 mg/g body weight three times per week (e.g., Monday, Wednesday, and Friday) until takedown. Typically, ;85-100% of susceptible animals become diabetic within 10-18 days of the first injection.

Islet Isolation
Islet isolation by collagenase perfusion of the common bile duct and islet culture was adapted from Jarchum et al. (28). The common bile duct was cannulated with a 27-gauge needle. Pancreata were perfused with 7-9 mL of 0.85 mg/mL cold collagenase P (Roche, Indianapolis, IN) dissolved in Hanks' balanced salt solution. Inflated pancreata were removed, placed in RPMI 1640, incubated at 37°C for 20 min then homogenized with a 14-gauge needle in ice-cold RPMI containing 1% horse serum. Islets were separated by a Histopaque 1077 gradient, removed from the interface, washed in ice-cold 5% horse serum RPMI and placed in TRIzol (Invitrogen, Carlsbad, CA).

Culture of Islet T Cells
Isolated islets pooled from eight rats were cultured with interleukin (IL)-2 to promote the expansion of activated T cells. Culture medium contained RPMI 1640 with 10% FBS, 1 mmol/L Na pyruvate, nonessential amino acids, 28 mmol/L b-mercaptoethanol, and 50 units/mL recombinant human IL-2 (PeproTech, Rocky Hill, NJ). Fifty islets per well were cultured in 24-well plates (Greiner Bio-One) in 5% CO 2 at 37°C. On day 7, islets and infiltrating cells were collected and passed through a 40-mm strainer to retain the islets. T cells were pelleted and resuspended in TRIzol (28).

Quantitative RT-PCR
Islets were isolated from individual rats and analyzed separately. Total RNA was isolated from islets in TRIzol according to the manufacturers' protocol, treated with Turbo DNA-free (Applied Biosystems, Carlsbad, CA) to prevent genomic DNA contamination and reverse transcribed into cDNA (High Capacity cDNA Reverse Transcription Kit; Applied Biosystems). Quantitative PCR was performed with an ABI 7900HT Sequence Detector using SYBR Green PCR Mix (Applied Biosystems), 0.5 mmol/L primers and 40 amplification cycles (95.0°C for 0:15; 60.0°C for 1:00). Amplification data were collected and analyzed using ABI SDS2.2 software. Fold change in transcript abundance was normalized to either glyceraldehyde-3-phosphate dehydrogenase (GAPDH) or TCR b-chain constant region (TCR-Cb) by the DDCt method and analyzed by Student t test (two comparators) or one-way ANOVA (three comparators) to determine significant differences in transcript abundance between strains or time points. Primers are listed in Supplementary Table 1.

Analysis of TCR-Vb13 and TCR-Va5 CDR3 Clonality
We determined the clonality of TCRs by examining the clone-specific CDR3 region in each of them. To analyze CDR3 sequence variants in Vb13 + and Va5 + transcripts, islet or spleen RNA was isolated and reverse transcribed into cDNA as described above. TCR-Vb13 + and TCR-Va5 + transcripts were PCR-amplified with variable region-specific forward primers and constant region-specific reverse primers (Supplementary Table 1) using platinum high-fidelity Taq DNA polymerase (Invitrogen). Amplicons were cloned into the pCR4-TOPO vector (TOPO TA cloning kit; Invitrogen). Transformants were plated on Luria broth (LB)-agar-kanamycin plates. Single clones were 1) grown in LB-kanamycin overnight and plasmids were isolated (QIAprep spin mini-prep kit; Qiagen, Valencia, CA) or 2) arrayed onto LB-kanamycin plates. Vb13 and Va5 plasmids or bacterial clones were sequenced by GeneWiz (Plainfield, NJ) with the T3 primer. Sequences were aligned with a multiple sequence alignment program (http://www.genome.jp/tools/clustalw/).

Va5 Confirmation Analysis
Transcript abundance of Va5 or Va68 joined to one of three Ja regions was analyzed by quantitative RT-PCR (qRT-PCR). Va-Ja abundance was normalized to total Ja abundance, as further described in the legend to Supplementary Fig. 4.

TCR Transcript Accumulation in the Prediabetic Islet
To understand early events in T1D at the islet level, we first measured islet T-cell accumulation after induction. TCR-Cb transcript abundance, indicating T-cell infiltration of the islet, was measured by qRT-PCR. LEW.1WR1 islets had a nearly 10-fold increase in TCR transcripts on day 7 relative to LEW.1W or WF rats on the same day and compared with untreated islets (Fig. 1). Elevated TCR-Cb transcript abundance persisted at 9 days after poly I:C infusion but was diminished by day 10, even in the diabetic islets, likely because b-cell loss limits available antigen for T cells, as is suggested by the loss of insulin expression at this time (Fig. 5). There was no significant increase in T-cell transcripts in the islets of either strain of resistant rats at any time point (Fig. 1). We also analyzed TCR-a constant region transcripts to confirm our results. As expected, Ca and Cb transcript abundance was strongly correlated in all samples analyzed (R 2 = 0.90, P , 0.0001; data not shown).

Vb13 + T Cells Accumulate in the Islets of Prediabetic LEW.1WR1 Rats
Having established that susceptible, but not resistant, rats accumulate T cells in their islets early in diabetes progression, we hypothesized that Vb13 + T cells would be abundant in LEW.1WR1 islets. TCR-Vb13 + transcripts from poly I:C-treated LEW.1WR1 islets were analyzed by qRT-PCR and expressed as a percentage of total TCR transcripts. We find that while Vb13 + transcripts compose a small proportion of islet T-cell transcripts in untreated rats, their abundance increases approximately threefold during diabetes progression, to ;7.5% of TCR transcripts in the diabetic islet (Fig. 2). Given the requisite role for TCR-Vb13 + T cells in diabetes pathogenesis, the relatively low proportion of this population of T cells in the islet was unexpected, although when the absolute increase of islet-infiltrating T cells on days 7-9 is considered, the actual number of islet Vb13 + T cells is substantial.

Islet Vb13 + T Cells Clonally Expand During Diabetes Progression
Vb13 + T cells comprise a small proportion of islet T cells during diabetes progression (Fig. 2), but they do represent a significant portion of CD4 + T cells expanded ex vivo with IL-2 (from day 5 islets, ;20% of the CD4 + T cells) (9). Therefore, we hypothesized that islet Vb13 + T cells clonally expand in response to autoantigen. To analyze Vb13 clonality, we performed CDR3 sequence analysis of islet Vb13 + transcripts. If Vb13 + T cells become focused in islet antigens, they will clonally expand and we will observe fewer CDR3 sequences, each at high frequency. If there is not antigen-specific clonal expansion, many different Vb13 + transcripts will be observed, each at low frequency. We analyzed Vb13-CDR3 sequences from LEW.1WR1 islets 4, 5, and 7 days after poly I:C induction and from T cells cultured ex vivo from islets 5 days after poly I:C induction. Vb13 + transcripts from untreated LEW.1WR1 spleens serve as controls for T cells outside the target organ. Sequence analysis of islet-homing TCRs was not performed for resistant rats (LEW.1W and WF rats) because there were few Vb13 + transcripts in their islets (Supplementary Fig. 1).
We aligned Vb13-CDR3 sequences to cluster identical sequences then calculated the frequency of each unique sequence (Fig. 3). As expected, T cells in the naïve periphery are not clonally expanded, displaying substantial CDR3 sequence diversity with no sequence observed at high frequency (Fig. 3). Islet Vb13 + transcripts Figure 1-T-cell transcripts accumulate in the islets of prediabetic LEW.1WR1 rats but not in resistant rats. Rats of each strain were injected with 1 mg/g poly I:C three times weekly (e.g., days 0, 2, 4, 7, 9, and 11) or until the day of takedown, as indicated. Day 0 rats are untreated. To determine the extent of T-cell infiltration into the islets of poly I:C-treated rats, we measured the transcript abundance of the TCR-Cb by qRT-PCR. Transcript abundance was normalized to GAPDH, and the mean 6 SE is plotted above. TCR-Cb abundance in LEW.1WR1 islets is significantly elevated on day 7, as determined by one-way ANOVA. Overall  To determine the relative abundance of Vb13 + T cells in the islet during progression to diabetes, we measured TCR-Vb13 transcript abundance and normalized this to the abundance of TCR-Cb transcripts. This measure gives us the percentage of TCR transcripts that are Vb13 + . There is a strong positive trend in Vb13 transcript abundance with a significant increase on day 10 in both the diabetic (P = 0.02) and nondiabetic (P = 0.001) islet. N = 3-5 rats per time point, 29 rats total. D, day; diab, diabetes.
were not clonally expanded 4 days postinduction, but by day 5 we observe oligoclonal expansion of Vb13 + transcripts: there are fewer unique sequences each at a higher frequency. By day 7, there is substantial clonal expansion of one CDR3 sequence in 44% of all Vb13 + sequences. This sequence was equally represented in each of the two strains rats analyzed. Vb13 + transcripts analyzed from T cells cultured ex vivo with IL-2 displayed large expansions of a few Vb13 + clonotypes. Two dominant clonotypes by themselves represent ;70% of all sequences.
Together, these results strongly suggest an islet antigen-specific response of Vb13 + T cells in LEW.1WR1 islets beginning 5 days after the start of diabetes induction. Clonal focusing of Vb13 + transcripts is greatest in cultured islet T cells, which, as we have reported, show a preponderance of Vb13 + CD4 + T cells.

TCR-Va5 Transcripts Are Antigen-Focused in LEW.1WR1 Islets
We next examined TCR-Va5 clonality in LEW.1WR1 islets. In NOD mice, islet-homing, insulin-reactive T cells use a dominant TCR-Va chain (TCR-Va5D4*04) (29), which recognizes insulin B:9-23 (21). Insulin B:9-23 peptide sequences are identical among mice, rats, and humans, and alignment of published sequences shows that NOD I-Ab g7 shares similarities with RT1.Bb u (present in WF, LEW.1WR1, and LEW.1W rats) in the antigen-binding groove, raising the possibility that this peptide is an autoantigen in rats. We analyzed rat TCR-Va5 orthologs and identified four TCR-Va5 paralogs harboring identical CDR1 and CDR2 peptide sequences that are .92% identical to NOD TRAV5D4*04 (Supplementary Fig. 2). We hypothesized that if LEW.1WR1 rat T cells target the insulin B:9-23 epitope during diabetes development, then rat TCR-Va5 + transcripts in the prediabetic LEW.1WR1 islet will be abundant and antigen-focused (i.e., they will have limited CDR3 diversity). We analyzed TCR-Va5 + transcript abundance in the islets of poly I:C-treated LEW.1WR1 rats by qRT-PCR. Consistent with our hypothesis, we observe transient islet accumulation of Va5 transcripts that wanes at diabetes onset ( Supplementary Fig. 3).
We next performed Va5-CDR3 sequence analysis from LEW.1WR1 spleen, islets, and ex vivo-cultured islet T cells to determine whether Va5 + transcripts are clonally expanded. T cells in the periphery are not clonally expanded, displaying substantial CDR3 sequence diversity (Fig. 4). Va5 + transcripts from LEW.1WR1 islets and cultured islet T cells display clonal expansion of few unique Va5 + transcripts (Fig. 4), indicating an antigen-specific response of Va5 + T cells in prediabetic LEW.1WR1 islets. We confirmed this isletspecific skewing of Va5 + transcripts by qRT-PCR analysis ( Supplementary Fig. 4). Novel rat Va5 paralogs identified in our analysis are listed in Supplementary  Fig. 2. A: CDR3 sequence variants in islet Vb13 + transcripts were analyzed by direct sequence analysis. Vb13 + transcripts were PCR-amplified with a Vb13-specific forward primer and a Cb1/2 reverse primer. Amplicons were cloned and sequenced, and sequences were aligned with a multiple sequence alignment program (ClustalW). The percentage occurrence of each unique CDR3 sequence cluster was calculated and is plotted above. Each black or white segment on the graph represents a unique CDR3 sequence. B: Frequent sequences are annotated on the graph (1-7) and listed. The naïve periphery (spleen untreated) does not display a Vb13-specific antigen-focused response evident by the large number of sequences all observed at low frequency. Vb13 + T-cell transcripts do not display an antigenspecific clonal expansion on day 4. Two separate experiments, of pooled islets from eight LEW.1WR1 rats each, indicate antigenspecific expansion of a limited number of CDR3 clonotypes in the islet 5 days after poly I:C. For sequences analyzed, N = 117 cultured islet T cells, 66 islet day 7, 74 islet day 5-experiment (expt) 1, 71 islet day 5-experiment 2, 64 islet day 4, and 127 spleen untreated. Sequences represent results from pooled LEW.1WR1 islets; N = 8 cultured T cells, 2 day 7, 8 day 5-experiment 1, 8 day 5-experiment 2, 2 day 4, 2 untreated spleen. B: The most frequent junctional sequences identified among Vb13 transcripts are listed here. The entire junction sequence is shown starting with the end of the V region; CDR3 sequences in bold are up to the conserved phenylalanine (F), and in the remainder the Jb segment is displayed. All sequences identified in the analysis are listed in Supplementary Table 2.

Insulin Upregulation Is Concurrent With T-Cell Infiltration and Vb13 + Autoantigen Focusing in Prediabetic LEW.1WR1 Islets
The data presented above suggest that infiltration and clonal expansion of Vb13 + T cells occur in well-defined stages during T1D progression in poly I:C-treated LEW.1WR1 rats. We reasoned that this stereotypic sequence of events should also allow us to detect evidence of altered b-cell function due to Vb13 + T-cell infiltration.
To interrogate b-cell function, we analyzed insulin transcript abundance by qRT-PCR from the islets of poly I:C-treated LEW.1WR1 and LEW.1W rats.
We first observed that insulin transcript abundance in the islets of untreated LEW.1W and LEW1.WR1 rats was comparable (Fig. 5). On days 7 and 9, after poly I:C induction, however, LEW.1WR1 rats displayed significantly increased insulin transcript abundance, suggesting a change in b-cell function. By day 10 (when the first cases of T1D occurred), we observed a substantial reduction in insulin transcripts in LEW.1WR1 islets. In contrast, insulin mRNA levels in resistant LEW.1W rats showed little fluctuation over time, suggesting that poly I:C was not the cause of transcript variation in the susceptible rats.

DISCUSSION
The present studies substantially extend our previous discovery that genome-encoded TCR sequences control genetic susceptibility to T1D. In the rat, this genomeencoded TCR element is Vb13, the gene underlying the Iddm14 locus (9). Depletion of Vb13a + T cells prevents T1D in multiple rat strains (9), which, in conjunction with recent work in NOD mice, implies that TCR-based strategies could be useful in primary prevention of T1D in children (12). In addition, these data provide new insights into the earliest events that occur in islets in which b-cells are targeted for destruction.
We report here that Vb13 transcripts become clonally focused in LEW.1WR1 islets and increase in abundance during diabetes progression. These events precede insulin transcript upregulation, which may represent a compensatory response to the autoimmune attack. We first observed that total T-cell abundance in LEW.1WR1 rats increases on days 7-9, while TCR transcripts of any isotype do not accumulate in islets of resistant rats (Fig. 1). The proportion of Vb13 + TCR transcripts in LEW.1WR1 islets steadily increases during progression to diabetes (Fig. 2). This accumulation of T cells, the deletion of which prevents T1D (9), is consistent with a critical role for Vb13 + T cells both early and throughout disease progression.
Although Vb13 + T cells are required for diabetes, they are neither the only T cell present nor the majority of T cells in LEW.1WR1 islets. This is not surprising, given other features of T-cell populations that are related to diabetes. For example, CD8 + cytotoxic T lymphocytes are the most prevalent component of the immune infiltrate in diabetic human pancreatic tissue (30), whereas Vb13a in the rat is preferentially expressed on CD4 + T cells (8). After in vitro expansion of islet T cells with IL-2, which promotes the proliferation of activated (antigen-experienced) T cells (28), Figure 4-TCR-Va5 + transcripts are clonally focused in prediabetic LEW.1WR1 islets. CDR3 sequence variants in islethoming Va5 + transcripts were analyzed by direct sequence analysis. Va5 + transcripts were PCR-amplified with a Va5-specific forward primer and a Ca reverse primer. Amplicons were cloned and sequenced, and sequences were aligned with a multiple sequence alignment program. A: The percentage occurrence of each unique CDR3 sequence was calculated and is plotted above. Each black or white segment on the graph represents a unique CDR3 sequence. Frequent sequences are annotated on the graph (1-4) and listed in B. Islets from eight LEW.1WR1 rats were pooled for islet T-cell culture; three independent samples were analyzed for day 5 islets or untreated spleen. The naïve periphery (splenocytes from untreated rats) does not display a Va5-specific antigen-focused response, as evidenced by the large number of sequences, all of which were observed at low frequency. There was substantial clonal expansion of Va5 + transcripts on day 5 and cultured islets indicating an islet antigen-specific expansion. For sequences analyzed, N = 113 cultured islet T cells, 24 islet T cells on day 5, 62 untreated rat splenic T cells. B: The most frequent junctional sequences identified among Va5 transcripts are listed here. The entire junction sequence is shown starting with the end of the V region. CDR3 sequences are shown in bold up to the conserved phenylalanine (F), and the remainder of the Jb segment is displayed. All sequences identified in the analysis are listed in Supplementary Table 3. .20% of the CD4 + T cells from LEW.1WR1 islets are Vb13a + (9).
Vb13a + transcripts in LEW.1WR1 islets are oligoclonally expanded beginning 5 days after induction (Fig. 3), evidence that Vb13a + T cells recognize critical islet autoantigens. This antigen recognition depends on inherited elements of the TCR (CDR1 and CDR2, and not solely the hypervariable CDR3 regions) because WF T cells bearing the low-risk TCR-Vb13b allele do not accumulate in islets and do not cause T1D (Fig. 1). Furthermore, numerous CDR3 sequences were observed among clonally expanded Vb13 + T-cell populations, suggesting that Vb13a is required for autoantigen recognition in conjunction with permissive, but not monoclonally restricted, CDR3s. This is consistent with the hypothesis that TCR germline CDR1 and CDR2 sequences are a driving factor for recognition of islet autoantigens.
There is precedence for germline TCR sequence recognition of autoantigen in the NOD diabetes model and in other autoimmune diseases. For example, in celiac disease, characterized by T-cell autoreactivity toward certain gluten peptides, recognition of HLA-DQ8-a-Igliadin (pMHC) is biased toward TCR-Vb9*01 + TCRs. Mapping of the TCR-pMHC interface and CDR mutational analysis identified CDR1 (Leu37b) and CDR2 (Tyr57b) residues critical for interacting with a-I-gliadin (26). Interestingly, CDR1-37b is polymorphic in rat TCR-Vb13 (7), suggesting that autoantigen engagement by CDR1 and CDR2 residues may be a critical mechanism of self-reactivity in multiple autoimmune diseases.
Recognition of insulin B:9-23 in NOD mice depends on critical CDR1 and CDR2 residues in TCR-Va5D4 (21). Furthermore, the human homolog of mouse TCR-Va5D4 (TCR-Va13-1) promotes an anti-insulin response in retrogenic NOD mice, indicating a pan-species mechanism of autoantigen (e.g., insulin) recognition (21). We analyzed rat TCR-Va5 transcripts, bearing CDR1 and CDR2 sequences that are highly homologous with NOD TCR-Va5D4. We observed a transient accumulation of rat TCR-Va5 transcripts in LEW.1WR1 islets (Supplementary Fig. 3) and islet-specific clonal focusing of Va5 + transcripts preceding diabetes onset (Fig. 4). Based on the rat usage of TCR-Va5, we speculate that insulin may be a critical autoantigen early in rat diabetogenesis, as is likely in NOD mice (21,31).
The discordant kinetics of Vb13 and Va5 transcript accumulation in LEW.1WR1 islets suggest that Vb13 may recognize multiple antigens during the course of diabetes development. Vb13 steadily increases toward diabetes onset, whereas the transient increase in Va5 abundance wanes at diabetes onset. The temporal abundance of Va5 is consistent with the finding that insulin B:9-23 is an initiating autoantigen in NOD mice but is not a primary target of islet T cells at diabetes onset (31). We previously showed that depletion of Vb13 + T cells prevents poly I:C-induced diabetes and preserves healthy islet architecture in LEW.1WR1 rats (9). If Vb13 + T cells are required throughout progression to diabetes and/or recognize numerous islet antigens during diabetes progression, then a TCR-targeted strategy may not only protect against diabetes induction but also progression from autoimmunity to overt diabetes.
We observe significant T-cell accumulation in LEW.1WR1 islets 7-9 days after poly I:C induction. There is a substantial increase in insulin transcript abundance at this time as well. This may indicate that T cellmediated b-cell death leads to compensatory upregulation of insulin gene transcription from remaining b-cells. As expected, insulin transcripts are severely diminished at or near diabetes onset. Substantial islet T-cell infiltration is not apparent in resistant rats (LEW.1W and WF), and accordingly there is no fluctuation in insulin transcript abundance in these samples, confirming that if b-cell destruction is reflected by insulin transcript fluctuation, Figure 5-Altered b-cell function in LEW.1WR1 rats follows Vb13specific autoimmunity and is concurrent with significant islet T-cell infiltration. To analyze b-cell dysfunction in the prediabetic islet, we analyzed insulin transcript abundance from poly I:C-treated LEW.1WR1 (susceptible) and LEW.1W (resistant) islets. Insulin transcripts were normalized to GAPDH and the mean 6 SE are displayed. LEW.1WR1 islets show significantly elevated insulin transcripts on days 7 and 9 (P = 0.02 and P = 0.01, respectively, vs. untreated), which is severely diminished in the diabetic islet, compared with naïve, day 2, day 7, or day 9 after poly I:C induction (P = 0.001, P < 0.001, P = 0.046, and P = 0.002, respectively). LEW.1W insulin levels do not vary during the course of poly I:C treatment. One of five LEW.1W day 11 islet samples was an outlier (;23 SD) and was excluded from the above data set, but may be biologically relevant given that 1) a small proportion of LEW.1W rats become diabetic with poly I:C treatment and 2) Vb13 + T cells begin to accumulate in the islets of some LEW.1W rats on days 9-11. Spleen samples from untreated LEW.1WR1 rats were analyzed as a negative control for insulin transcript production. N = 3-5 rats per time point, 29 LEW.1WR1, 18 LEW.1W total. D, day; diab, diabetes; Spl Untrx, untreated spleen.
it is not related to poly I:C treatment but to T-cell infiltration. This suggests that there is an immediate functional consequence of T-cell infiltration in the islet and a progressive decline in b-cell mass/function that persists for multiple days before hyperglycemia.
Our data also indicate that the trimolecular complex alone is not sufficient for rat autoimmune diabetes. Similar to the situation in humans, in whom diabetes develops in a limited proportion of individuals with high-risk MHC susceptibility genes, we have demonstrated that, despite a genetically high-risk background, including diabetes risk alleles at RT1.B/D u , Vb13a, and Va5, most LEW.1W rats are relatively free of islet T-cell infiltration and maintain normal insulin production after poly I:C induction. Treated LEW.1W rats showed no islet infiltration initially, but, after a delay, modest infiltration of diabetogenic Vb13a + T cells occurred ( Supplementary Fig. 1). Therefore, Iddm37, the only quantitative trait locus interval that distinguishes LEW.1W from LEW.1WR1 (32), modifies the course of disease in LEW.1W rats by delaying islet infiltration by Vb13a + T cells, dampening islet T-cell infiltration, and thus protecting LEW.1W rats from disease. These results demonstrate that Vb13a + T cells, while necessary for diabetes, are not sufficient for poly I:C-induced islet infiltration; Iddm37 susceptibility alleles are required to promote the early and robust infiltration of LEW.1WR1 islets.
The present data clearly specify the mechanism by which anti-Vb13 deletional therapy substantially prevents disease. A highly focused but small population of Vb13 + T cells appears very early in prediabetic islets and expands rapidly. Deletion of this genetically critical population early on is hence a logical strategy for primary prevention of T1D, whether it occurs spontaneously or in response to immune perturbation. Whether this kind of deletional therapy would be effective for secondary prevention (i.e., after islet autoimmunity commences) is an open question, but it is a plausible expectation, based on preliminary data showing that depletion of Vb13a + T cells prevents diabetes even when started after poly I:C treatment has been started (M.H. and R.A.E., unpublished observations).
Perhaps the most important implication of the present data is that a search for genomic T1D susceptibility loci in the human TCR regions (in populations stratified for high-risk MHC haplotype) would be a worthwhile endeavor (33). Newer structural analyses of the TCR-pMHC also support this view (26,34). Finally, the staging of events leading to autoimmune diabetes in the LEW.1WR1 rat, characterized here, and the identification of corollary events in human diabetes will allow us to target therapeutics to specific stages in diabetes progression.