# coding=utf-8
# Copyright 2022 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

# Lint as: python3
"""Dataset preprocessing and pipeline.

Built for Trembl dataset.
"""
import os
import types
from absl import logging
import gin
import numpy as np
import tensorflow.compat.v1 as tf


from protein_lm import domains


@gin.configurable
def make_protein_domain(include_anomalous_amino_acids=True,