text: ibraries for each of the T. cruzi strains were com-
  petitively
  mapped
  to
  all
  three
  publically
  available
  maxicircle references using BWA-mem [99, 100]. The
  available mitochondrial genomes with their respective
  NCBI accession numbers were: TcI Sylvio (FJ203996.1),
  Tc