File size: 75,182 Bytes
48344db 8c19222 48344db 8c19222 48344db 8c19222 48344db 8c19222 48344db 8c19222 48344db 8c19222 48344db 8c19222 48344db 8c19222 48344db |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975 976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005 1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019 1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033 1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047 1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061 1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075 1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089 1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103 1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114 1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128 1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142 1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156 1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170 1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184 1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198 1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212 1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226 1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237 1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251 1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265 1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279 1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293 1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307 1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321 1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335 1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349 1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360 1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374 1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388 1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402 1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416 1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430 1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444 1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458 1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472 1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483 1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497 1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511 1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525 1526 1527 1528 1529 1530 |
import os
import json
import logging
import time
import traceback
from pathlib import Path
import shutil
import psutil
import glob
import gc
from datetime import datetime
from tqdm.auto import tqdm
from typing import Optional, Union, Set, Dict, List, Tuple
# Hugging Face related
from huggingface_hub import list_models, hf_hub_download, HfApi
from huggingface_hub.utils import EntryNotFoundError, RepositoryNotFoundError, HFValidationError
# Data handling and Parquet
import pandas as pd
import pyarrow as pa
import pyarrow.parquet as pq
# Embeddings
from sentence_transformers import SentenceTransformer
import torch
# --- IPFS CID Generation Code (from provided ipfs_multiformats.py) ---
# https://github.com/endomorphosis/ipfs_accelerate_py/blob/5f88e36551b626e99b05bd4bd8a3e043c5c0e8c9/ipfs_accelerate_py/ipfs_multiformats.py#L25
import hashlib
from multiformats import CID, multihash
import tempfile
import os
import sys
class ipfs_multiformats_py:
def __init__(self, resources, metadata):
self.multihash = multihash
return None
# Step 1: Hash the file content with SHA-256
def get_file_sha256(self, file_path):
hasher = hashlib.sha256()
with open(file_path, 'rb') as f:
while chunk := f.read(8192):
hasher.update(chunk)
return hasher.digest()
# Step 2: Wrap the hash in Multihash format
def get_multihash_sha256(self, file_content_hash):
mh = self.multihash.wrap(file_content_hash, 'sha2-256')
return mh
# Step 3: Generate CID from Multihash (CIDv1)
def get_cid(self, file_data):
if os.path.isfile(file_data) == True:
absolute_path = os.path.abspath(file_data)
file_content_hash = self.get_file_sha256(file_data)
mh = self.get_multihash_sha256(file_content_hash)
cid = CID('base32', 'raw', mh)
else:
with tempfile.NamedTemporaryFile(mode='w', delete=False) as f:
filename = f.name
with open(filename, 'w') as f_new:
f_new.write(file_data)
file_content_hash = self.get_file_sha256(filename)
mh = self.get_multihash_sha256(file_content_hash)
cid = CID('base32', 1, 'raw', mh)
os.remove(filename)
return str(cid)
# --- End IPFS CID Code ---
# --- Configuration ---
# --- Paths ---
GDRIVE_MOUNT_POINT = "/content/drive/MyDrive"
GDRIVE_FOLDER_NAME = "hf_metadata_dataset_collection"
LOCAL_FOLDER_NAME = "./hf_metadata_dataset_local_fallback"
LOCAL_WORK_DIR = Path(os.path.abspath("./hf_embedding_work"))
# Input JSONL File
INPUT_JSONL_FILENAME = "all_models_metadata.jsonl" # Assumed in final dir
# --- Output File Names ---
# Final Destination (Drive/Local Fallback)
FINAL_METADATA_PARQUET_FILENAME = "model_metadata.parquet" # Metadata + CIDs
FINAL_EMBEDDINGS_PARQUET_FILENAME = "model_embeddings.parquet" # CIDs + Embeddings
FINAL_LOG_FILENAME = "embedding_generator.log"
# Local Temporary Files (in LOCAL_WORK_DIR)
LOCAL_TEMP_METADATA_JSONL = "temp_model_metadata.jsonl"
LOCAL_TEMP_EMBEDDINGS_JSONL = "temp_model_embeddings.jsonl"
LOCAL_TEMP_LOG_FILENAME = "temp_embedding_generator.log"
# --- Batch Configuration ---
BATCH_SAVE_THRESHOLD = 1000 # Save after processing this many records
BATCH_SAVE_DIR_NAME = "batch_files" # Subdirectory for batch files
PERIODIC_MERGE_FREQUENCY = 5 # Merge to Google Drive every X batches (0 to disable)
CLEAN_AFTER_PERIODIC_MERGE = True # Whether to clean up batch files after periodic merge
# --- Memory Management Configuration ---
MEMORY_CLEANUP_THRESHOLD_MB = 1000 # Force extra cleanup if memory growth exceeds this
# --- Processing Config ---
MAX_RECORDS_TO_PROCESS = None # Limit records from JSONL (for testing), None for all
BATCH_SIZE = 1024
EMBEDDING_MODEL_NAME = 'all-MiniLM-L6-v2'
# Control what gets embedded and CID generated
PROCESS_CONFIG_JSON = True
PROCESS_README_CONTENT = True
# --- Hub Upload Config ---
UPLOAD_TO_HUB = True
TARGET_REPO_ID = "YourUsername/your-dataset-repo-name" # CHANGE THIS
TARGET_REPO_TYPE = "dataset"
METADATA_FILENAME_IN_REPO = "model_metadata.parquet"
EMBEDDINGS_FILENAME_IN_REPO = "model_embeddings.parquet"
# --- Setup Logging ---
logging.basicConfig(level=logging.INFO, format='%(asctime)s - %(levelname)s - %(message)s')
# --- Helper Functions ---
def make_serializable(obj):
"""Converts common non-serializable types found in ModelInfo."""
if hasattr(obj, 'isoformat'): return obj.isoformat()
if hasattr(obj, 'rfilename'): return obj.rfilename
try: return str(obj)
except Exception: return None
def safe_serialize_dict(data_dict):
"""Attempts to serialize a dictionary, handling non-serializable items."""
# This function might not be needed if we read directly from JSONL,
# but keep it for potential future use or if handling raw ModelInfo objects.
serializable_dict = {}
if not isinstance(data_dict, dict): logging.warning(f"safe_serialize_dict non-dict input: {type(data_dict)}"); return {}
for key, value in data_dict.items():
if isinstance(value, (list, tuple)): serializable_dict[key] = [make_serializable(item) for item in value]
elif isinstance(value, dict): serializable_dict[key] = safe_serialize_dict(value)
elif isinstance(value, (str, int, float, bool, type(None))): serializable_dict[key] = value
else: serializable_dict[key] = make_serializable(value)
return {k: v for k, v in serializable_dict.items() if v is not None or (k in data_dict and data_dict[k] is None)}
# --- NEW: Generate Record CID Function ---
def generate_record_cid(cid_generator, model_id: str, config_cid: Optional[str] = None, readme_cid: Optional[str] = None) -> str:
"""
Generate a primary record CID from model_id and available content CIDs.
This will be used as the primary key for both Parquet files.
"""
# Create a base string that combines all available IDs
cid_parts = [f"model:{model_id}"]
if config_cid:
cid_parts.append(f"config:{config_cid}")
if readme_cid:
cid_parts.append(f"readme:{readme_cid}")
# Join all parts and generate a CID from the combined string
combined_string = "|".join(cid_parts)
return cid_generator.get_cid(combined_string)
# --- Safe Parquet Saving Function ---
def save_dataframe_to_parquet_safely(df, filepath):
"""Saves DataFrame to Parquet with explicit schema handling for mixed types."""
try:
# First attempt: Convert known problematic columns to string
df_safe = df.copy()
# Handle the 'gated' column specifically which caused the original error
if 'gated' in df_safe.columns:
df_safe['gated'] = df_safe['gated'].astype(str)
# Convert all object columns except model_id and record_cid to string to be safe
for col in df_safe.select_dtypes(include=['object']).columns:
if col not in ['model_id', 'record_cid', 'config_cid', 'readme_cid']: # Keep IDs as is
df_safe[col] = df_safe[col].astype(str)
# Try saving with pandas
df_safe.to_parquet(filepath, index=False, compression='gzip')
return True
except Exception as e:
logging.warning(f"First attempt to save Parquet failed: {e}")
try:
# Second attempt: Use PyArrow with explicit schema
schema = pa.Schema.from_pandas(df)
fields = list(schema)
# Convert all string/binary fields to string type except IDs
for i, field in enumerate(fields):
if (pa.types.is_string(field.type) or pa.types.is_binary(field.type)) and \
field.name not in ['model_id', 'record_cid', 'config_cid', 'readme_cid']:
fields[i] = pa.field(field.name, pa.string())
new_schema = pa.schema(fields)
# Force conversion of problematic columns
df_safe = df.copy()
for col in df_safe.select_dtypes(include=['object']).columns:
if col not in ['model_id', 'record_cid', 'config_cid', 'readme_cid']:
df_safe[col] = df_safe[col].astype(str)
# Convert to table with schema and write
table = pa.Table.from_pandas(df_safe, schema=new_schema)
pq.write_table(table, filepath)
logging.info(f"Successfully saved to {filepath} using PyArrow with schema conversion")
return True
except Exception as e2:
logging.error(f"Both Parquet saving attempts failed for {filepath}: {e2}")
# Last resort - save to CSV instead
try:
csv_filepath = filepath.with_suffix('.csv')
logging.warning(f"Falling back to CSV format: {csv_filepath}")
df.to_csv(csv_filepath, index=False)
logging.info(f"Saved as CSV instead: {csv_filepath}")
return False
except Exception as e3:
logging.error(f"Even CSV fallback failed: {e3}")
return False
# --- UPDATED: Load Processed CIDs from EMBEDDINGS Parquet and Batch Files ---
def load_processed_cids_from_parquet(filepath: Path, batch_dir: Optional[Path] = None) -> set:
"""
Reads the record_cid column from:
1. The final EMBEDDINGS Parquet file
2. Any batch files in the batch_dir, if provided
3. Also checks for CSV fallback files
Returns a set of processed record_cids.
"""
processed_cids = set()
# 1. Load from final Parquet if it exists
if filepath.is_file():
logging.info(f"Found existing EMBEDDINGS Parquet: {filepath}. Loading processed CIDs...")
try:
# Only load the record_cid column for efficiency
df_existing = pd.read_parquet(filepath, columns=['record_cid'])
file_cids = set(df_existing['record_cid'].tolist())
processed_cids.update(file_cids)
logging.info(f"Loaded {len(file_cids)} CIDs from existing Embeddings Parquet.")
except Exception as e:
logging.warning(f"Could not load 'record_cid' from '{filepath}': {e}. Will check for CSV fallback.")
# Check for CSV fallback
csv_filepath = filepath.with_suffix('.csv')
if csv_filepath.is_file():
try:
df_csv = pd.read_csv(csv_filepath, usecols=['record_cid'])
csv_cids = set(df_csv['record_cid'].tolist())
processed_cids.update(csv_cids)
logging.info(f"Loaded {len(csv_cids)} CIDs from CSV fallback: {csv_filepath}")
except Exception as csv_e:
logging.warning(f"Could not load CIDs from CSV fallback: {csv_e}")
# 2. Load from batch files if provided
if batch_dir and batch_dir.is_dir():
# Check both Parquet and CSV batch files
batch_files_parquet = list(batch_dir.glob("embeddings_batch_*.parquet"))
batch_files_csv = list(batch_dir.glob("embeddings_batch_*.csv"))
if batch_files_parquet:
logging.info(f"Found {len(batch_files_parquet)} embedding batch Parquet files.")
batch_cids_count = 0
for batch_file in batch_files_parquet:
try:
df_batch = pd.read_parquet(batch_file, columns=['record_cid'])
batch_cids = set(df_batch['record_cid'].tolist())
batch_cids_count += len(batch_cids)
processed_cids.update(batch_cids)
except Exception as e:
logging.warning(f"Error loading CIDs from batch file {batch_file}: {e}")
logging.info(f"Loaded {batch_cids_count} additional CIDs from Parquet batch files.")
if batch_files_csv:
logging.info(f"Found {len(batch_files_csv)} embedding batch CSV files.")
csv_batch_cids_count = 0
for batch_file in batch_files_csv:
try:
df_batch = pd.read_csv(batch_file, usecols=['record_cid'])
batch_cids = set(df_batch['record_cid'].tolist())
csv_batch_cids_count += len(batch_cids)
processed_cids.update(batch_cids)
except Exception as e:
logging.warning(f"Error loading CIDs from CSV batch file {batch_file}: {e}")
logging.info(f"Loaded {csv_batch_cids_count} additional CIDs from CSV batch files.")
total_cids = len(processed_cids)
if total_cids > 0:
logging.info(f"Total of {total_cids} unique record CIDs loaded for resume.")
else:
logging.info(f"No existing processed CIDs found. Will process all records.")
return processed_cids
# final conversion from JSONL to Parquet would happen only once at the end of all processing.
def convert_jsonl_to_parquet(
meta_jsonl_path: Path,
embed_jsonl_path: Path,
local_temp_metadata_path: Path,
local_temp_embeddings_path: Path,
chunk_size: int = 50000,
max_memory_mb: int = 2000 # Memory threshold for adaptive processing
):
"""
Convert very large JSONL files to Parquet using a streaming approach with minimal memory usage.
Args:
meta_jsonl_path: Path to metadata JSONL file
embed_jsonl_path: Path to embeddings JSONL file
local_temp_metadata_path: Output path for metadata Parquet file
local_temp_embeddings_path: Output path for embeddings Parquet file
chunk_size: Initial number of records to process at once (will adapt based on memory usage)
max_memory_mb: Maximum memory usage threshold in MB
"""
import json
import os
import gc
import time
import pyarrow as pa
import pyarrow.parquet as pq
from tqdm import tqdm
import psutil
logging.info("Starting optimized streaming conversion from JSONL to Parquet")
def get_memory_usage_mb():
"""Get current memory usage in MB"""
process = psutil.Process(os.getpid())
return process.memory_info().rss / (1024 * 1024)
def estimate_total_lines(file_path, sample_size=1000000):
"""Estimate total lines in file without reading entire file"""
try:
# Get file size
file_size = os.path.getsize(file_path)
# If file is small enough, just count lines directly
if file_size < 100 * 1024 * 1024: # 100 MB
with open(file_path, 'r') as f:
return sum(1 for _ in f)
# Sample beginning of file to estimate line size
line_count = 0
bytes_read = 0
with open(file_path, 'r') as f:
for _ in range(sample_size):
line = f.readline()
if not line:
break
bytes_read += len(line.encode('utf-8'))
line_count += 1
if line_count == 0:
return 0
# Calculate average line size and estimate total
avg_line_size = bytes_read / line_count
estimated_lines = int(file_size / avg_line_size)
logging.info(f"Estimated lines in {file_path.name}: {estimated_lines:,} (based on avg line size: {avg_line_size:.1f} bytes)")
return estimated_lines
except Exception as e:
logging.error(f"Error estimating lines in file: {e}")
return 0
def infer_schema_from_samples(file_path, num_samples=1000):
"""Infer schema by sampling from beginning, middle, and end of file"""
try:
file_size = os.path.getsize(file_path)
if file_size == 0:
return None
samples = []
with open(file_path, 'r') as f:
# Read samples from beginning
for _ in range(num_samples // 3):
line = f.readline()
if not line:
break
try:
samples.append(json.loads(line))
except json.JSONDecodeError:
continue
# Read samples from middle
middle_pos = file_size // 2
f.seek(middle_pos)
f.readline() # Skip partial line
for _ in range(num_samples // 3):
line = f.readline()
if not line:
break
try:
samples.append(json.loads(line))
except json.JSONDecodeError:
continue
# Read samples from end
end_pos = max(0, file_size - 100000) # 100 KB from end
f.seek(end_pos)
f.readline() # Skip partial line
for _ in range(num_samples // 3):
line = f.readline()
if not line:
break
try:
samples.append(json.loads(line))
except json.JSONDecodeError:
continue
if not samples:
logging.error(f"No valid JSON samples found in {file_path}")
return None
# Convert samples to pyarrow schema
import pandas as pd
sample_df = pd.DataFrame(samples)
# Convert all columns to string type to avoid type mismatches
for col in sample_df.columns:
if col != 'embedding': # Keep embedding as is since it's numeric
sample_df[col] = sample_df[col].astype(str)
# Handle embedding field specially if it exists
if 'embedding' in sample_df.columns:
# Ensure embedding is a list of float
if sample_df['embedding'].dtype != 'object':
# If not already a list, convert to string
sample_df['embedding'] = sample_df['embedding'].astype(str)
# Convert to PyArrow Table and extract schema
table = pa.Table.from_pandas(sample_df)
logging.info(f"Inferred schema with {len(table.schema.names)} fields")
return table.schema
except Exception as e:
logging.error(f"Error inferring schema: {e}", exc_info=True)
return None
def stream_jsonl_to_parquet(jsonl_path, parquet_path, file_type, initial_chunk_size):
"""Process a JSONL file in a streaming fashion with adaptive chunk sizing"""
if not jsonl_path.exists():
logging.warning(f"{file_type} JSONL file not found: {jsonl_path}")
return False
logging.info(f"Starting streaming conversion of {file_type} JSONL: {jsonl_path} -> {parquet_path}")
start_time = time.time()
# Get schema by sampling
schema = infer_schema_from_samples(jsonl_path)
if schema is None:
logging.error(f"Failed to infer schema for {file_type}")
return False
# Estimate total for progress reporting
estimated_total = estimate_total_lines(jsonl_path)
# Track current chunk size - will adapt based on memory usage
current_chunk_size = initial_chunk_size
records_processed = 0
chunk_count = 0
try:
# Create parquet writer with inferred schema
with pq.ParquetWriter(parquet_path, schema) as writer:
# Process in chunks to limit memory usage
buffer = []
with tqdm(total=estimated_total, desc=f"Converting {file_type}") as pbar:
with open(jsonl_path, 'r') as f:
for line_num, line in enumerate(f, 1):
try:
record = json.loads(line)
# Convert all string fields to ensure type consistency
for key, value in record.items():
if key != 'embedding' and value is not None and not isinstance(value, (list, dict)):
record[key] = str(value)
buffer.append(record)
# When buffer reaches chunk size, write to parquet
if len(buffer) >= current_chunk_size:
# Convert buffer to PyArrow table
import pandas as pd
chunk_df = pd.DataFrame(buffer)
# Handle embedding field specially if it exists
if 'embedding' in chunk_df.columns:
# Ensure embedding is a list of float
if chunk_df['embedding'].dtype != 'object':
# If not already a list, convert to string
chunk_df['embedding'] = chunk_df['embedding'].astype(str)
# Convert non-embedding fields to string
for col in chunk_df.columns:
if col != 'embedding':
chunk_df[col] = chunk_df[col].astype(str)
# Write chunk
table = pa.Table.from_pandas(chunk_df, schema=schema)
writer.write_table(table)
# Update progress
records_processed += len(buffer)
pbar.update(len(buffer))
chunk_count += 1
# Clear buffer and force garbage collection
buffer = []
del chunk_df, table
gc.collect()
# Adaptive chunk sizing based on memory usage
current_memory = get_memory_usage_mb()
if current_memory > max_memory_mb:
# Reduce chunk size if memory usage is too high
new_chunk_size = max(1000, int(current_chunk_size * 0.8))
logging.info(f"Memory usage high ({current_memory:.1f} MB). Reducing chunk size from {current_chunk_size} to {new_chunk_size}")
current_chunk_size = new_chunk_size
elif current_memory < max_memory_mb * 0.5 and current_chunk_size < initial_chunk_size:
# Increase chunk size if memory usage is low
new_chunk_size = min(initial_chunk_size, int(current_chunk_size * 1.2))
logging.info(f"Memory usage low ({current_memory:.1f} MB). Increasing chunk size from {current_chunk_size} to {new_chunk_size}")
current_chunk_size = new_chunk_size
# Log progress periodically
if chunk_count % 10 == 0:
elapsed = time.time() - start_time
rate = records_processed / elapsed if elapsed > 0 else 0
logging.info(f"Processed {records_processed:,} records ({rate:.1f} records/sec), memory: {current_memory:.1f} MB")
except json.JSONDecodeError:
logging.warning(f"Invalid JSON at line {line_num}")
continue
except Exception as e:
logging.warning(f"Error processing line {line_num}: {e}")
continue
# Write any remaining records
if buffer:
try:
import pandas as pd
chunk_df = pd.DataFrame(buffer)
# Handle embedding field specially if it exists
if 'embedding' in chunk_df.columns:
# Ensure embedding is a list of float
if chunk_df['embedding'].dtype != 'object':
# If not already a list, convert to string
chunk_df['embedding'] = chunk_df['embedding'].astype(str)
# Convert non-embedding fields to string
for col in chunk_df.columns:
if col != 'embedding':
chunk_df[col] = chunk_df[col].astype(str)
# Write final chunk
table = pa.Table.from_pandas(chunk_df, schema=schema)
writer.write_table(table)
# Update progress
records_processed += len(buffer)
pbar.update(len(buffer))
except Exception as e:
logging.error(f"Error writing final chunk: {e}")
# Report final stats
elapsed = time.time() - start_time
rate = records_processed / elapsed if elapsed > 0 else 0
logging.info(f"Successfully converted {records_processed:,} {file_type} records in {elapsed:.1f} seconds ({rate:.1f} records/sec)")
logging.info(f"Created {file_type} Parquet file: {parquet_path} ({os.path.getsize(parquet_path) / (1024*1024):.1f} MB)")
return True
except Exception as e:
logging.error(f"Error during {file_type} conversion: {e}", exc_info=True)
return False
# Convert metadata file
meta_success = stream_jsonl_to_parquet(meta_jsonl_path, local_temp_metadata_path, "metadata", chunk_size)
# Force garbage collection before processing embeddings
gc.collect()
# Convert embeddings file
embed_success = stream_jsonl_to_parquet(embed_jsonl_path, local_temp_embeddings_path, "embeddings", chunk_size)
if meta_success and embed_success:
logging.info("JSONL to Parquet conversion completed successfully")
return True
else:
logging.error("JSONL to Parquet conversion encountered errors")
return False
# --- Sync Local Files to Final Destination ---
def sync_local_files_to_final(
local_metadata_path: Path,
local_embeddings_path: Path,
local_log_path: Path,
final_metadata_path: Path,
final_embeddings_path: Path,
final_log_path: Path
):
"""
Copies local Parquet/log files to overwrite final destination files.
Returns True if all necessary copies succeeded.
"""
success = True # Assume success initially
# Copy Metadata Parquet or CSV
if local_metadata_path.is_file():
try:
logging.info(f"Copying local Metadata '{local_metadata_path}' to '{final_metadata_path}'...")
final_metadata_path.parent.mkdir(parents=True, exist_ok=True)
shutil.copyfile(local_metadata_path, final_metadata_path)
logging.info("Metadata file copy successful.")
except Exception as e:
logging.error(f"Failed to copy Metadata file: {e}", exc_info=True)
success = False
# Also check for CSV fallback
csv_path = local_metadata_path.with_suffix('.csv')
if csv_path.is_file():
try:
csv_dest = final_metadata_path.with_suffix('.csv')
logging.info(f"Copying CSV fallback: {csv_path} to {csv_dest}")
shutil.copyfile(csv_path, csv_dest)
except Exception as e:
logging.error(f"Failed to copy CSV fallback: {e}")
# Don't affect overall success status for CSV fallback
else:
logging.debug("Local Metadata file non-existent. Skipping copy.")
# Copy Embeddings Parquet or CSV
if local_embeddings_path.is_file():
try:
logging.info(f"Copying local Embeddings '{local_embeddings_path}' to '{final_embeddings_path}'...")
final_embeddings_path.parent.mkdir(parents=True, exist_ok=True)
shutil.copyfile(local_embeddings_path, final_embeddings_path)
logging.info("Embeddings file copy successful.")
except Exception as e:
logging.error(f"Failed to copy Embeddings file: {e}", exc_info=True)
success = False
# Also check for CSV fallback
csv_path = local_embeddings_path.with_suffix('.csv')
if csv_path.is_file():
try:
csv_dest = final_embeddings_path.with_suffix('.csv')
logging.info(f"Copying CSV fallback: {csv_path} to {csv_dest}")
shutil.copyfile(csv_path, csv_dest)
except Exception as e:
logging.error(f"Failed to copy CSV fallback: {e}")
# Don't affect overall success status for CSV fallback
else:
logging.debug("Local Embeddings file non-existent. Skipping copy.")
# Copy Log File
if local_log_path.is_file() and local_log_path.stat().st_size > 0:
try:
logging.info(f"Copying local log '{local_log_path}' to overwrite '{final_log_path}'...")
final_log_path.parent.mkdir(parents=True, exist_ok=True)
shutil.copyfile(local_log_path, final_log_path)
logging.info("Log file copy successful.")
except Exception as e:
logging.error(f"Failed to copy log file: {e}", exc_info=True)
success = False # Log copy fail is less critical but still indicate
else:
logging.debug("Local temp log empty/non-existent. Skipping log copy.")
return success
# Track memory across perform_periodic_merge() function calls
last_merge_memory_usage = 0
def perform_periodic_merge(
batch_save_dir: Path,
merged_batch_tracker: Set[str],
local_temp_metadata_path: Path,
local_temp_embeddings_path: Path,
final_log_path: Path,
local_temp_log_path: Path
):
"""
100% JSONL-only periodic merge with NO Parquet operations whatsoever.
Only merges to JSONL files, conversion to Parquet happens separately at the end.
"""
global last_merge_memory_usage
# Track memory at function start
process = psutil.Process()
start_memory = process.memory_info().rss / (1024 * 1024)
logging.info(f"Starting JSONL-only periodic merge. Current memory: {start_memory:.2f} MB")
# Define paths for working JSONL files (strip .parquet suffix if present)
meta_jsonl_path = Path(str(local_temp_metadata_path).replace('.parquet', '.jsonl'))
embed_jsonl_path = Path(str(local_temp_embeddings_path).replace('.parquet', '.jsonl'))
# Find all JSONL batch files that haven't been merged yet
meta_batch_files = []
embed_batch_files = []
# Only look for JSONL batch files
for batch_file in batch_save_dir.glob("metadata_batch_*.jsonl"):
if batch_file.name not in merged_batch_tracker:
meta_batch_files.append(batch_file)
for batch_file in batch_save_dir.glob("embeddings_batch_*.jsonl"):
if batch_file.name not in merged_batch_tracker:
embed_batch_files.append(batch_file)
if not meta_batch_files and not embed_batch_files:
logging.info("No new JSONL batches to merge periodically.")
return 0
logging.info(f"Performing JSONL-only merge of {len(meta_batch_files)} metadata files and {len(embed_batch_files)} embedding files")
# --- Process metadata files ---
if meta_batch_files:
try:
# Load existing record CIDs from JSONL to avoid duplicates
existing_cids = set()
# Check if JSONL exists from previous run and load CIDs
if meta_jsonl_path.exists():
logging.info(f"Scanning existing JSONL for CIDs: {meta_jsonl_path}")
with open(meta_jsonl_path, 'r') as f:
for line in f:
try:
record = json.loads(line)
if 'record_cid' in record:
existing_cids.add(record['record_cid'])
except:
pass
logging.info(f"Found {len(existing_cids)} existing CIDs in metadata JSONL")
# Open JSONL in append mode
with open(meta_jsonl_path, 'a') as jsonl_out:
# Process each batch file
for batch_file in meta_batch_files:
try:
logging.info(f"Processing metadata batch: {batch_file.name}")
# Process the JSONL batch file line by line
new_records_count = 0
total_records_count = 0
with open(batch_file, 'r') as batch_in:
for line in batch_in:
total_records_count += 1
try:
record = json.loads(line)
# Filter out records with CIDs that already exist
if 'record_cid' in record and record['record_cid'] not in existing_cids:
# Write new record to output JSONL
jsonl_out.write(line)
# Add to existing CIDs to avoid future duplicates
existing_cids.add(record['record_cid'])
new_records_count += 1
except json.JSONDecodeError:
logging.warning(f"Could not parse JSON line in {batch_file.name}")
# Log stats
logging.info(f"Batch has {total_records_count} records, {new_records_count} are new")
# Mark batch as processed
merged_batch_tracker.add(batch_file.name)
# Clean up batch file if enabled
if CLEAN_AFTER_PERIODIC_MERGE:
try:
batch_file.unlink()
logging.debug(f"Removed processed batch file: {batch_file}")
except Exception as e:
logging.warning(f"Could not remove batch file: {e}")
# Force memory cleanup after each batch
gc.collect()
except Exception as e:
logging.error(f"Error processing batch file {batch_file}: {e}")
except Exception as e:
logging.error(f"Error in metadata merge process: {e}", exc_info=True)
# Force memory cleanup between metadata and embeddings
gc.collect()
# --- Process embeddings files (similar approach) ---
if embed_batch_files:
try:
# Load existing record CIDs from JSONL to avoid duplicates
existing_cids = set()
# Check if JSONL exists from previous run and load CIDs
if embed_jsonl_path.exists():
logging.info(f"Scanning existing JSONL for CIDs: {embed_jsonl_path}")
with open(embed_jsonl_path, 'r') as f:
for line in f:
try:
record = json.loads(line)
if 'record_cid' in record:
existing_cids.add(record['record_cid'])
except:
pass
logging.info(f"Found {len(existing_cids)} existing CIDs in embeddings JSONL")
# Open JSONL in append mode
with open(embed_jsonl_path, 'a') as jsonl_out:
# Process each batch file
for batch_file in embed_batch_files:
try:
logging.info(f"Processing embeddings batch: {batch_file.name}")
# Process the JSONL batch file line by line
new_records_count = 0
total_records_count = 0
with open(batch_file, 'r') as batch_in:
for line in batch_in:
total_records_count += 1
try:
record = json.loads(line)
# Filter out records with CIDs that already exist
if 'record_cid' in record and record['record_cid'] not in existing_cids:
# Write new record to output JSONL
jsonl_out.write(line)
# Add to existing CIDs to avoid future duplicates
existing_cids.add(record['record_cid'])
new_records_count += 1
except json.JSONDecodeError:
logging.warning(f"Could not parse JSON line in {batch_file.name}")
# Log stats
logging.info(f"Batch has {total_records_count} records, {new_records_count} are new")
# Mark batch as processed
merged_batch_tracker.add(batch_file.name)
# Clean up batch file if enabled
if CLEAN_AFTER_PERIODIC_MERGE:
try:
batch_file.unlink()
logging.debug(f"Removed processed batch file: {batch_file}")
except Exception as e:
logging.warning(f"Could not remove batch file: {e}")
# Force memory cleanup after each batch
gc.collect()
except Exception as e:
logging.error(f"Error processing batch file {batch_file}: {e}")
except Exception as e:
logging.error(f"Error in embeddings merge process: {e}", exc_info=True)
# -- Only sync the log file, no Parquet files during runtime --
try:
if local_temp_log_path.is_file() and local_temp_log_path.stat().st_size > 0:
final_log_path.parent.mkdir(parents=True, exist_ok=True)
shutil.copyfile(local_temp_log_path, final_log_path)
logging.info("Log file sync successful.")
except Exception as e:
logging.error(f"Failed to sync log file: {e}")
# Final cleanup
for _ in range(3):
gc.collect()
# Update memory tracking for next call
end_memory = process.memory_info().rss / (1024 * 1024)
logging.info(f"Memory at end of merge: {end_memory:.2f} MB (Change: {end_memory - start_memory:.2f} MB)")
last_merge_memory_usage = end_memory
return len(meta_batch_files) + len(embed_batch_files)
# --- UPDATED: Main Embedding Generation Function with CID-based Primary Key ---
def create_embedding_dataset(
input_jsonl_filepath: Path,
final_metadata_parquet_path: Path,
final_embeddings_parquet_path: Path,
local_temp_metadata_path: Path,
local_temp_embeddings_path: Path,
local_temp_log_path: Path,
final_log_filepath: Path,
max_records: Optional[int] = None,
batch_size: int = 32,
embedding_model_name: str = EMBEDDING_MODEL_NAME,
process_config: bool = PROCESS_CONFIG_JSON,
process_readme: bool = PROCESS_README_CONTENT,
):
"""
JSONL-only workflow that reads metadata, generates CIDs & embeddings,
and saves all outputs as JSONL until the very end.
"""
# --- Setup batch directory ---
batch_save_dir = LOCAL_WORK_DIR / BATCH_SAVE_DIR_NAME
batch_save_dir.mkdir(parents=True, exist_ok=True)
# --- Define JSONL paths by converting Parquet paths ---
meta_jsonl_path = Path(str(local_temp_metadata_path).replace('.parquet', '.jsonl'))
embed_jsonl_path = Path(str(local_temp_embeddings_path).replace('.parquet', '.jsonl'))
# --- Configure logging to use the local temp log file ---
log_file_handler = logging.FileHandler(local_temp_log_path)
log_stream_handler = logging.StreamHandler()
for handler in logging.root.handlers[:]: logging.root.removeHandler(handler)
logging.basicConfig(level=logging.INFO, format='%(asctime)s - %(levelname)s - %(message)s', handlers=[log_file_handler, log_stream_handler])
logging.getLogger('huggingface_hub.repocard_data').setLevel(logging.ERROR)
# --- Log configuration ---
logging.info(f"--- Starting Embedding Generation with JSONL-only workflow ---")
logging.info(f"Input JSONL: '{input_jsonl_filepath}'")
logging.info(f"Metadata JSONL Output: '{meta_jsonl_path}'")
logging.info(f"Embeddings JSONL Output: '{embed_jsonl_path}'")
logging.info(f"Final Metadata Parquet Output (post-processing): '{final_metadata_parquet_path}'")
logging.info(f"Final Embeddings Parquet Output (post-processing): '{final_embeddings_parquet_path}'")
logging.info(f"Batch Save Directory: '{batch_save_dir}'")
logging.info(f"Batch Save Threshold: {BATCH_SAVE_THRESHOLD}")
logging.info(f"Periodic Merge Frequency: {PERIODIC_MERGE_FREQUENCY} batches")
logging.info(f"Clean After Periodic Merge: {CLEAN_AFTER_PERIODIC_MERGE}")
logging.info(f"Local Temp Log: '{local_temp_log_path}'")
logging.info(f"Final Log Output: '{final_log_filepath}'")
logging.info(f"Embedding Model: '{embedding_model_name}', Batch Size: {batch_size}")
logging.info(f"Process Config: {process_config}, Process README: {process_readme}")
logging.info(f"Max Records: {'All' if max_records is None else max_records}")
# --- Load Embedding Model ---
try:
logging.info(f"Loading embedding model: {embedding_model_name}")
# Check for MPS (Apple Silicon GPU) availability first, then CUDA, then fall back to CPU
if hasattr(torch.backends, 'mps') and torch.backends.mps.is_available():
device = 'mps'
logging.info(f"Using Apple Silicon GPU (MPS)")
elif torch.cuda.is_available():
device = 'cuda'
logging.info(f"Using NVIDIA GPU (CUDA)")
else:
device = 'cpu'
logging.info(f"Using CPU (no GPU acceleration available)")
model = SentenceTransformer(embedding_model_name, device=device)
cid_generator = ipfs_multiformats_py(resources=None, metadata=None) # Initialize CID generator
logging.info("Embedding model & CID generator loaded.")
except Exception as e:
logging.error(f"Failed to load embedding model or init CID generator: {e}", exc_info=True)
return None, None # Return None for both paths
# --- Load processed CIDs from existing JSONL files ---
processed_cids = set()
# 1. Check the main embeddings JSONL file
if embed_jsonl_path.exists():
logging.info(f"Found existing embeddings JSONL: {embed_jsonl_path}. Loading processed CIDs...")
try:
with open(embed_jsonl_path, 'r') as f:
for line in f:
try:
record = json.loads(line)
if 'record_cid' in record:
processed_cids.add(record['record_cid'])
except:
pass
logging.info(f"Loaded {len(processed_cids)} CIDs from existing embeddings JSONL.")
except Exception as e:
logging.warning(f"Could not load CIDs from '{embed_jsonl_path}': {e}")
# 2. Check batch files
batch_files = list(batch_save_dir.glob("embeddings_batch_*.jsonl"))
if batch_files:
logging.info(f"Found {len(batch_files)} embedding batch JSONL files.")
batch_cids_count = 0
for batch_file in batch_files:
try:
with open(batch_file, 'r') as f:
for line in f:
try:
record = json.loads(line)
if 'record_cid' in record:
processed_cids.add(record['record_cid'])
batch_cids_count += 1
except:
pass
except Exception as e:
logging.warning(f"Error loading CIDs from batch file {batch_file}: {e}")
logging.info(f"Loaded {batch_cids_count} additional CIDs from JSONL batch files.")
initial_processed_count = len(processed_cids)
logging.info(f"Resuming from {initial_processed_count} records already processed.")
# --- Batch saving and periodic merge setup ---
batch_counter = 0
records_since_last_save = 0
merged_batch_tracker = set() # Track which batch files have been merged
# Keep a lookup of model_id to record_cid for this session
model_id_to_record_cid = {}
# --- Process JSONL File ---
metadata_records_list = [] # Holds dicts for metadata
embeddings_records_list = [] # Holds dicts for embeddings
batch_inputs = [] # Holds tuples for batch processing
record_count_from_jsonl = 0; processed_count_this_run = 0; skipped_resume_count = 0; skipped_error_count = 0
start_time = None
try:
logging.info(f"Opening input JSONL file: {input_jsonl_filepath}")
start_time = time.time()
with input_jsonl_filepath.open('r', encoding='utf-8') as f_jsonl:
pbar = tqdm(f_jsonl, desc="Processing JSONL", unit="record")
for line in pbar:
record_count_from_jsonl += 1
if max_records is not None and processed_count_this_run >= max_records:
logging.info(f"Reached max_records limit ({max_records}). Stopping.");
break
try:
line = line.strip()
if not line: continue
data = json.loads(line) # Original metadata dictionary
model_id = data.get('id')
if not model_id or not isinstance(model_id, str):
logging.warning(f"Skip record {record_count_from_jsonl}: missing/invalid 'id'.");
skipped_error_count += 1;
continue
# --- Extract text for embedding & CID generation ---
config_text = ""; config_cid = None; config_dict_or_str = data.get('config')
if process_config and config_dict_or_str is not None:
if isinstance(config_dict_or_str, dict):
try:
config_text = json.dumps(config_dict_or_str, separators=(',', ':'));
config_cid = cid_generator.get_cid(config_text) # Use compact string for CID
except TypeError:
logging.warning(f"Cannot serialize config for {model_id}. Skip CID/embed.")
elif isinstance(config_dict_or_str, str): # Handle if config is already a string
config_text = config_dict_or_str;
config_cid = cid_generator.get_cid(config_text)
else:
logging.warning(f"Config for {model_id} type {type(config_dict_or_str)}. Skip CID/embed.")
readme_text = ""; readme_cid = None
if process_readme:
card_data = data.get('cardData')
if isinstance(card_data, dict):
readme_text = card_data.get('text', '') or ''
elif isinstance(card_data, str):
readme_text = card_data # If cardData itself is the string
if not readme_text and isinstance(data.get('description'), str):
readme_text = data['description'] # Fallback
if readme_text:
readme_cid = cid_generator.get_cid(readme_text)
# --- Generate record_cid (primary key) ---
record_cid = generate_record_cid(cid_generator, model_id, config_cid, readme_cid)
# Store in lookup for future reference
model_id_to_record_cid[model_id] = record_cid
# Skip if this record_cid has already been processed
if record_cid in processed_cids:
skipped_resume_count += 1
continue
processed_count_this_run += 1
pbar.set_postfix_str(f"Batching: {model_id}", refresh=True)
# Add to batch for embedding
batch_inputs.append((data, config_text, readme_text, config_cid, readme_cid, record_cid))
# --- Process Batch when full ---
if len(batch_inputs) >= batch_size:
pbar.set_postfix_str(f"Embedding batch ({len(batch_inputs)})...", refresh=True)
try:
original_data_batch = [item[0] for item in batch_inputs]
config_texts_batch = [item[1] for item in batch_inputs]
readme_texts_batch = [item[2] for item in batch_inputs]
config_cids_batch = [item[3] for item in batch_inputs]
readme_cids_batch = [item[4] for item in batch_inputs]
record_cids_batch = [item[5] for item in batch_inputs]
# Generate embeddings
config_embeddings = model.encode(config_texts_batch, batch_size=batch_size, show_progress_bar=False) if process_config else [None] * len(batch_inputs)
readme_embeddings = model.encode(readme_texts_batch, batch_size=batch_size, show_progress_bar=False) if process_readme else [None] * len(batch_inputs)
# --- Create records for BOTH data formats ---
for i, original_data in enumerate(original_data_batch):
current_model_id = original_data.get('id')
current_record_cid = record_cids_batch[i]
if not current_model_id or not current_record_cid: continue
# 1. Metadata Record
metadata_record = original_data.copy() # Start with all original metadata
# Remove bulky/embedded fields if they exist, keep CIDs
metadata_record.pop('config_embedding', None)
metadata_record.pop('readme_embedding', None)
# Add CIDs
metadata_record['record_cid'] = current_record_cid # Primary key
if process_config: metadata_record['config_cid'] = config_cids_batch[i]
if process_readme: metadata_record['readme_cid'] = readme_cids_batch[i]
metadata_records_list.append(metadata_record)
# 2. Embedding Record
embedding_record = {
'record_cid': current_record_cid, # Primary key
'model_id': current_model_id # Keep model_id for reference
}
if process_config:
embedding_record['config_embedding'] = config_embeddings[i].tolist() if config_texts_batch[i] else None
if process_readme:
embedding_record['readme_embedding'] = readme_embeddings[i].tolist() if readme_texts_batch[i] else None
embeddings_records_list.append(embedding_record)
# Mark this record as processed to avoid reprocessing if script restarts
processed_cids.add(current_record_cid)
# Increment counter for batch saving
records_since_last_save += 1
logging.debug(f"Processed batch. Metadata size: {len(metadata_records_list)}, Embeddings size: {len(embeddings_records_list)}")
# --- Save batch if we've reached the threshold ---
if records_since_last_save >= BATCH_SAVE_THRESHOLD:
batch_counter += 1
timestamp = int(time.time())
# Save metadata batch as JSONL
meta_batch_file = batch_save_dir / f"metadata_batch_{batch_counter}_{timestamp}.jsonl"
success_meta = True
try:
with open(meta_batch_file, 'w') as f:
for record in metadata_records_list:
f.write(json.dumps(safe_serialize_dict(record)) + '\n')
logging.info(f"Saved metadata batch {batch_counter} as JSONL with {len(metadata_records_list)} records")
except Exception as e:
logging.error(f"Error saving metadata batch as JSONL: {e}")
success_meta = False
# Save embeddings batch as JSONL
embed_batch_file = batch_save_dir / f"embeddings_batch_{batch_counter}_{timestamp}.jsonl"
success_embed = True
try:
with open(embed_batch_file, 'w') as f:
for record in embeddings_records_list:
f.write(json.dumps(safe_serialize_dict(record)) + '\n')
logging.info(f"Saved embeddings batch {batch_counter} as JSONL with {len(embeddings_records_list)} records")
except Exception as e:
logging.error(f"Error saving embeddings batch as JSONL: {e}")
success_embed = False
if success_meta and success_embed:
logging.info(f"Saved batch {batch_counter} with {len(embeddings_records_list)} records")
else:
logging.warning(f"Batch {batch_counter} save had issues. Check logs.")
# Clear the lists to start a new batch and reset counter
metadata_records_list = []
embeddings_records_list = []
records_since_last_save = 0
# --- Periodic merge to final JSONL files ---
if PERIODIC_MERGE_FREQUENCY > 0 and batch_counter % PERIODIC_MERGE_FREQUENCY == 0:
pbar.set_postfix_str(f"Periodic merge to JSONL...", refresh=True)
batches_merged = perform_periodic_merge(
batch_save_dir=batch_save_dir,
merged_batch_tracker=merged_batch_tracker,
local_temp_metadata_path=local_temp_metadata_path,
local_temp_embeddings_path=local_temp_embeddings_path,
final_log_path=final_log_filepath,
local_temp_log_path=local_temp_log_path
)
pbar.set_postfix_str(f"Merged {batches_merged} batches to JSONL", refresh=True)
except Exception as e_embed:
logging.error(f"Error embedding batch: {e_embed}", exc_info=True)
skipped_error_count += len(batch_inputs) # Count whole batch as skipped
batch_inputs = [] # Clear batch
# Handle line processing errors
except json.JSONDecodeError:
logging.warning(f"Skip record {record_count_from_jsonl}: JSON decode error.");
skipped_error_count += 1
except Exception as e_line:
logging.error(f"Skip record {record_count_from_jsonl}: Error - {e_line}", exc_info=False);
skipped_error_count += 1
# --- End reading JSONL file ---
# --- Process Final Remaining Batch ---
if batch_inputs:
pbar.set_postfix_str(f"Embedding final batch ({len(batch_inputs)})...", refresh=True)
try:
# Process just like the main batch
original_data_batch = [item[0] for item in batch_inputs]
config_texts_batch = [item[1] for item in batch_inputs]
readme_texts_batch = [item[2] for item in batch_inputs]
config_cids_batch = [item[3] for item in batch_inputs]
readme_cids_batch = [item[4] for item in batch_inputs]
record_cids_batch = [item[5] for item in batch_inputs]
config_embeddings = model.encode(config_texts_batch, batch_size=batch_size, show_progress_bar=False) if process_config else [None] * len(batch_inputs)
readme_embeddings = model.encode(readme_texts_batch, batch_size=batch_size, show_progress_bar=False) if process_readme else [None] * len(batch_inputs)
for i, original_data in enumerate(original_data_batch):
current_model_id = original_data.get('id')
current_record_cid = record_cids_batch[i]
if not current_model_id or not current_record_cid: continue
metadata_record = original_data.copy()
metadata_record.pop('config_embedding', None)
metadata_record.pop('readme_embedding', None)
metadata_record['record_cid'] = current_record_cid # Primary key
if process_config: metadata_record['config_cid'] = config_cids_batch[i]
if process_readme: metadata_record['readme_cid'] = readme_cids_batch[i]
metadata_records_list.append(metadata_record)
embedding_record = {
'record_cid': current_record_cid, # Primary key
'model_id': current_model_id # Keep model_id for reference
}
if process_config:
embedding_record['config_embedding'] = config_embeddings[i].tolist() if config_texts_batch[i] else None
if process_readme:
embedding_record['readme_embedding'] = readme_embeddings[i].tolist() if readme_texts_batch[i] else None
embeddings_records_list.append(embedding_record)
# Mark as processed
processed_cids.add(current_record_cid)
records_since_last_save += 1
logging.debug(f"Processed final batch. Metadata size: {len(metadata_records_list)}, Embeddings size: {len(embeddings_records_list)}")
except Exception as e_embed_final:
logging.error(f"Error embedding final batch: {e_embed_final}", exc_info=True)
skipped_error_count += len(batch_inputs)
# --- End processing batches ---
# --- Save any remaining records as a final batch ---
if metadata_records_list:
batch_counter += 1
timestamp = int(time.time())
# Save final metadata batch as JSONL
meta_batch_file = batch_save_dir / f"metadata_batch_{batch_counter}_{timestamp}.jsonl"
success_meta = True
try:
with open(meta_batch_file, 'w') as f:
for record in metadata_records_list:
f.write(json.dumps(safe_serialize_dict(record)) + '\n')
logging.info(f"Saved final metadata batch as JSONL with {len(metadata_records_list)} records")
except Exception as e:
logging.error(f"Error saving final metadata batch as JSONL: {e}")
success_meta = False
# Save final embeddings batch as JSONL
embed_batch_file = batch_save_dir / f"embeddings_batch_{batch_counter}_{timestamp}.jsonl"
success_embed = True
try:
with open(embed_batch_file, 'w') as f:
for record in embeddings_records_list:
f.write(json.dumps(safe_serialize_dict(record)) + '\n')
logging.info(f"Saved final embeddings batch as JSONL with {len(embeddings_records_list)} records")
except Exception as e:
logging.error(f"Error saving final embeddings batch as JSONL: {e}")
success_embed = False
if success_meta and success_embed:
logging.info(f"Saved final batch {batch_counter} with {len(embeddings_records_list)} records")
else:
logging.warning(f"Final batch {batch_counter} save had issues. Check logs.")
# Clear lists
metadata_records_list = []
embeddings_records_list = []
pbar.close()
logging.info("Finished processing records from JSONL.")
# --- Merge all remaining batches into the final JSONL files ---
# Process any remaining batches that haven't been merged
if PERIODIC_MERGE_FREQUENCY > 0:
logging.info("Performing final merge of any remaining batches...")
batches_merged = perform_periodic_merge(
batch_save_dir=batch_save_dir,
merged_batch_tracker=merged_batch_tracker,
local_temp_metadata_path=local_temp_metadata_path,
local_temp_embeddings_path=local_temp_embeddings_path,
final_log_path=final_log_filepath,
local_temp_log_path=local_temp_log_path
)
logging.info(f"Final merge: processed {batches_merged} remaining batches")
# Return the JSONL paths for final conversion
return meta_jsonl_path, embed_jsonl_path
# Handle file/main processing errors
except FileNotFoundError:
logging.error(f"CRITICAL: Input JSONL file not found: {input_jsonl_filepath}.");
return None, None
except Exception as e_main:
logging.error(f"CRITICAL error: {e_main}", exc_info=True);
return None, None
# --- Final Summary ---
finally:
total_processed_in_run = processed_count_this_run
total_batches_saved = batch_counter
total_batches_merged = len(merged_batch_tracker)
logging.info("--- Embedding Generation Summary ---")
logging.info(f"Records read from JSONL: {record_count_from_jsonl}")
logging.info(f"Records skipped (resume): {skipped_resume_count}")
logging.info(f"Records processed this run: {total_processed_in_run}")
logging.info(f"Records skipped (errors): {skipped_error_count}")
logging.info(f"Total batches saved: {total_batches_saved}")
logging.info(f"Total batches merged: {total_batches_merged}")
logging.info(f"Total unique records processed (including previous runs): {len(processed_cids)}")
if start_time:
logging.info(f"Total processing time: {time.time() - start_time:.2f} seconds")
logging.info("------------------------------------")
# --- Upload Function (Modified for two files) ---
def upload_files_to_hub(
local_metadata_path: Path,
local_embeddings_path: Path,
repo_id: str,
repo_type: str = "dataset",
metadata_path_in_repo: Optional[str] = None,
embeddings_path_in_repo: Optional[str] = None,
hf_token: Union[str, bool, None] = None
):
"""Uploads the generated Parquet files to the Hugging Face Hub."""
api = HfApi(token=hf_token)
uploaded_meta = False
uploaded_embed = False
# Upload Metadata (Parquet or CSV)
if local_metadata_path and local_metadata_path.exists():
path_in_repo_meta = metadata_path_in_repo or local_metadata_path.name
logging.info(f"Uploading Metadata: {local_metadata_path} to {repo_id} as {path_in_repo_meta}...")
try:
api.upload_file(
path_or_fileobj=str(local_metadata_path), path_in_repo=path_in_repo_meta, repo_id=repo_id, repo_type=repo_type,
commit_message=f"Update metadata ({local_metadata_path.suffix}) {time.strftime('%Y-%m-%d %H:%M:%S')}"
); logging.info("Metadata upload successful."); uploaded_meta = True
except Exception as e: logging.error(f"Metadata upload failed: {e}", exc_info=True)
else: logging.warning("Local metadata file not found or not specified. Skipping metadata upload.")
# Upload Embeddings (Parquet or CSV)
if local_embeddings_path and local_embeddings_path.exists():
path_in_repo_embed = embeddings_path_in_repo or local_embeddings_path.name
logging.info(f"Uploading Embeddings: {local_embeddings_path} to {repo_id} as {path_in_repo_embed}...")
try:
api.upload_file(
path_or_fileobj=str(local_embeddings_path), path_in_repo=path_in_repo_embed, repo_id=repo_id, repo_type=repo_type,
commit_message=f"Update embeddings ({local_embeddings_path.suffix}) {time.strftime('%Y-%m-%d %H:%M:%S')}"
); logging.info("Embeddings upload successful."); uploaded_embed = True
except Exception as e: logging.error(f"Embeddings upload failed: {e}", exc_info=True)
else: logging.warning("Local embeddings file not found or not specified. Skipping embeddings upload.")
return uploaded_meta and uploaded_embed # Return overall success
# --- Script Execution (`if __name__ == "__main__":`) ---
if __name__ == "__main__":
# --- Determine Paths ---
print("--- Determining Output Paths ---")
gdrive_base = Path(GDRIVE_MOUNT_POINT); gdrive_target_dir = gdrive_base / GDRIVE_FOLDER_NAME
local_fallback_dir = Path(LOCAL_FOLDER_NAME); effective_final_dir = None;
print(f"Checking GDrive: {gdrive_base}");
if gdrive_base.is_dir() and gdrive_base.exists():
print(f"Mount OK. Checking target: {gdrive_target_dir}");
if gdrive_target_dir.is_dir():
print(f"Target Google Drive directory found. Using Google Drive.")
effective_final_dir = gdrive_target_dir
else:
print(f"Target Google Drive directory '{gdrive_target_dir}' not found. Will attempt to create.")
try:
gdrive_target_dir.mkdir(parents=True, exist_ok=True)
print(f"Successfully created Google Drive directory.")
effective_final_dir = gdrive_target_dir
except Exception as e:
print(f"Error creating Google Drive directory '{gdrive_target_dir}': {e}")
print("Falling back to local directory.")
effective_final_dir = local_target_dir
else:
local_fallback_dir.mkdir(parents=True, exist_ok=True)
print(f"Mount not found. Using local fallback: {local_fallback_dir}")
effective_final_dir = local_fallback_dir
effective_final_dir.mkdir(parents=True, exist_ok=True); LOCAL_WORK_DIR.mkdir(parents=True, exist_ok=True); print(f"Effective final destination directory: {effective_final_dir}");
# Define final destination paths
final_metadata_filepath = effective_final_dir / FINAL_METADATA_PARQUET_FILENAME
final_embeddings_filepath = effective_final_dir / FINAL_EMBEDDINGS_PARQUET_FILENAME
final_log_filepath = effective_final_dir / FINAL_LOG_FILENAME
input_jsonl_filepath = effective_final_dir / INPUT_JSONL_FILENAME # Assume input is also in final dir
# Define local working paths
local_temp_metadata_path = LOCAL_WORK_DIR / LOCAL_TEMP_METADATA_JSONL
local_temp_embeddings_path = LOCAL_WORK_DIR / LOCAL_TEMP_EMBEDDINGS_JSONL
local_temp_log_path = LOCAL_WORK_DIR / LOCAL_TEMP_LOG_FILENAME
print(f"Input JSONL path: {input_jsonl_filepath}")
print(f"Final Metadata Parquet path: {final_metadata_filepath}")
print(f"Final Embeddings Parquet path: {final_embeddings_filepath}")
print(f"Final log file path: {final_log_filepath}")
print(f"Local temp Metadata path: {local_temp_metadata_path}")
print(f"Local temp Embeddings path: {local_temp_embeddings_path}")
print(f"Local temp log file path: {local_temp_log_path}")
print("-" * 30)
# Check for existing local temp files (for resumption)
resuming_from_previous_run = False
if local_temp_metadata_path.exists() and local_temp_embeddings_path.exists():
file_size_meta = local_temp_metadata_path.stat().st_size
file_size_embed = local_temp_embeddings_path.stat().st_size
if file_size_meta > 0 and file_size_embed > 0:
print(f"Found existing temp files, will resume processing:")
print(f" - Metadata file: {local_temp_metadata_path} ({file_size_meta} bytes)")
print(f" - Embeddings file: {local_temp_embeddings_path} ({file_size_embed} bytes)")
resuming_from_previous_run = True
else:
print(f"Found existing temp files but they're empty, removing them:")
if file_size_meta == 0:
print(f" - Removing empty metadata file: {local_temp_metadata_path}")
local_temp_metadata_path.unlink()
if file_size_embed == 0:
print(f" - Removing empty embeddings file: {local_temp_embeddings_path}")
local_temp_embeddings_path.unlink()
else:
print(f"No existing temp files found, starting fresh processing run.")
# --- Run the Embedding Generation ---
# Returns paths to the *local* temp parquet files if successful
local_meta_path, local_embed_path = create_embedding_dataset(
input_jsonl_filepath=input_jsonl_filepath,
final_metadata_parquet_path=final_metadata_filepath, # For loading resume
final_embeddings_parquet_path=final_embeddings_filepath, # For loading resume
local_temp_metadata_path=local_temp_metadata_path, # Local save dest
local_temp_embeddings_path=local_temp_embeddings_path, # Local save dest
local_temp_log_path=local_temp_log_path, # Local log dest
final_log_filepath=final_log_filepath, # Final log for logging clarity
max_records=MAX_RECORDS_TO_PROCESS,
batch_size=BATCH_SIZE,
embedding_model_name=EMBEDDING_MODEL_NAME,
process_config=PROCESS_CONFIG_JSON,
process_readme=PROCESS_README_CONTENT,
)
# --- Sync final local files to Drive/Destination ---
if local_meta_path or local_embed_path: # Check if at least one file was created
logging.info("Attempting to sync final local files to destination...")
# After all processing is complete
meta_jsonl_path = LOCAL_WORK_DIR / LOCAL_TEMP_METADATA_JSONL
embed_jsonl_path = LOCAL_WORK_DIR / LOCAL_TEMP_EMBEDDINGS_JSONL
# After all processing is complete
# Define Parquet output paths
local_temp_metadata_parquet = LOCAL_WORK_DIR / FINAL_METADATA_PARQUET_FILENAME
local_temp_embeddings_parquet = LOCAL_WORK_DIR / FINAL_EMBEDDINGS_PARQUET_FILENAME
# One-time conversion from JSONL to Parquet at the very end
convert_jsonl_to_parquet(
meta_jsonl_path=meta_jsonl_path,
embed_jsonl_path=embed_jsonl_path,
local_temp_metadata_path=local_temp_metadata_parquet,
local_temp_embeddings_path=local_temp_embeddings_parquet,
chunk_size=50000, # Starting chunk size (will adapt)
max_memory_mb=2000 # Memory threshold in MB
)
sync_success = sync_local_files_to_final(
local_metadata_path=local_temp_metadata_parquet, # Use the defined local path vars
local_embeddings_path=local_temp_embeddings_path,
local_log_path=local_temp_log_path,
final_metadata_path=final_metadata_filepath,
final_embeddings_path=final_embeddings_filepath,
final_log_path=final_log_filepath
)
if sync_success:
logging.info("Final sync to destination successful.")
# --- Upload final Parquet from Destination to Hub (Optional) ---
if UPLOAD_TO_HUB:
upload_files_to_hub(
local_metadata_path=final_metadata_filepath, # Upload from final dest
local_embeddings_path=final_embeddings_filepath,
repo_id=TARGET_REPO_ID,
repo_type=TARGET_REPO_TYPE,
metadata_path_in_repo=METADATA_FILENAME_IN_REPO,
embeddings_path_in_repo=EMBEDDINGS_FILENAME_IN_REPO,
hf_token=None # Uses login
)
else: logging.info("Hub upload skipped by configuration.")
else: logging.error("Final sync to destination FAILED. Cannot upload to Hub.")
else: logging.warning("Local Parquet file creation failed or no data processed. Skipping final sync and Hub upload.")
'''
# --- Clean up local temp files ---
logging.info("Attempting final cleanup of local temp files...")
try:
if local_temp_metadata_path.is_file(): local_temp_metadata_path.unlink(); logging.info(f"Cleaned {local_temp_metadata_path}")
if local_temp_embeddings_path.is_file(): local_temp_embeddings_path.unlink(); logging.info(f"Cleaned {local_temp_embeddings_path}")
if local_temp_log_path.is_file(): local_temp_log_path.unlink(); logging.info(f"Cleaned {local_temp_log_path}")
except Exception as clean_e: logging.warning(f"Could not clean up local temp files: {clean_e}")
'''
logging.info("Script finished.")
|