Using the MolProbity web server, analyze the protein structure for PDB ID 2HHB to assess its quality. Once the analysis is complete, identify and state the percentage of poor rotamers, the percentage of residues in favored regions of the Ramachandran plot, and the percentage of residues in outlier regions.
Navigate to molprobity.biochem.duke.edu. In the 'File Upload/Retrieval' section, enter '2HHB' into the 'PDB/NDB code' input field. Click the 'Submit' button next to the PDB code input to fetch the file. On the 'Uploaded PDB file' confirmation page, click the 'Submit' button to continue. On the 'Main page', click the 'Analyze geometry without all-atom contacts' link. On the 'Analyze all-atom contacts and geometry' page, ensure 'Ramachandran plots' and 'Rotamer evaluation' are checked under 'Charts, plots, and tables'. Scroll down and click the 'Submit' button to start the analysis. Wait for the analysis to complete and the results page to load. Once on the results page, locate the 'Summary statistics' section. Identify and extract the percentage for 'Poor rotamers'. Identify and extract the percentage for 'Ramachandran favored'. Identify and extract the percentage for 'Ramachandran outliers'. State these three identified percentages.
Successfully navigate to molprobity.biochem.duke.edu and initiate the analysis for PDB ID 2HHB. Successfully wait for the complete analysis of PDB ID 2HHB and reach the results page. State the exact percentage of 'Poor rotamers' from the 'Summary statistics' section. State the exact percentage of 'Ramachandran favored' from the 'Summary statistics' section. State the exact percentage of 'Ramachandran outliers' from the 'Summary statistics' section.