re science and methodology was homeopathy tradition in article c kv p jm unx sas com sasghm theseus unx sas com gary merrill writes in article apr cs rochester edu fulk cs rochester edu mark fulk writes what is wrong with the above observation is that it explicitly gives the impression and you may not in fact hold this view that the common perhaps even the correct approach for a scientist to follow is to sit around having flights of fancy and scheming on the basis of his jealousies and petty hatreds flights of fancy and other irrational approaches are common the crucial thing is not to sit around just having fantasies they aren t of any use unless they make you do some experiments i ve known a lot of scientists whose fantasies lead them on to creative work usually they won t admit out loud what the fantasy was prior to the consumption of a few beers simple example warren jelinek noticed an extremely heavy band on a dna electrophoresis gel of human alu fragments he got very excited hoping that he d seen some essential part of the control mechanism for eukaryotic genes this fantasy led him to sequence samples of the band and carry out binding assays the result was a well conserved or so bp sequence that occurs about times in the human genome unfortunately for warren s fantasy it turns out to be a transposon that is present in so many copies because it replicates itself and copies itself back into the genome on the other hand the characteristics of transposons were much elucidated the necessity of a cellular reverse transcriptase was recognized and the standard method of recognizing human dna was created other species have different sets of transposons fortunately for me warren and i used to eat dinner at t g i fridays all the time it further at least implicitly advances the position that sciences goes forward and it is not clear what this means given the context in which it occurs by generating in a completely non rational and even random way a plethora of hypotheses and theories that are then weeded out via the critical function of science i m not sure that it s random but there is no known rational mechanism for generating a rich set of interesting hypotheses if you are really working in an unknown area it is unlikely that you will have much sense of what might or might not be true under those circumstances the best thing to do is just follow whatever instincts you have if they are wrong you will find out soon enough but at least you will find out something if you try to do experiments at random with no prior conceptions at all in mind you will probably get nowhere though why this critical function should be less subject to the non rational forces is a mystery unfortunately the critical function does sometimes become hostage to non rational forces then we get varieties of pathological science lysenko mirsky s opposition to dna as gene cold fusion and so forth if experimental design hypotheses creation and theory construction are subject to jealousies and petty hatreds then this must be equally true of the application of any critical function concerning replication this is what leads one ala feyerabend to an anything goes view i don t agree that this follows in fact this is exactly the point at which i disagree with feyerabend it is a most important part of the culture of science that one keeps one s jealousies out of the refereeing process failures there are aplenty but on the whole things work out another point there are a couple of senses of the phrase experimental design i d say that the less rational part is in experimental choice not design alexander fleming proc royal soc chose to look for bacteriophage in his own mucus for strange reasons phage had previously been found in locust diarrhea fleming probably thought runny bottom runny nose what the hell it s worth a try but his method of looking for phage was well designed to detect anything phage like in fact he found lysozyme true the generation part can be totally irrational but typically it is not anecdotes concerning instances where a hypothesis seems to have resulted in some way from a dream or from one s political views simply do not generalize well to the actual history of science it is not clear to me what you mean by rational vs irrational perhaps you can give a few examples of surprising experiments that were tried out for perfectly rational reasons or interesting new theories that were first advanced from logical grounds the main examples i can think of are from modern high energy physics which is not typical of science as a whole mark a fulk university of rochester computer science department fulk cs rochester edu
