 Understanding the extracellular electron transport pathways in cyanobacteria is a major factor towards developing biophotovoltaics. Stressing cyanobacteria cells environmentally and then probing changes in physiology or metabolism following a significant change in electron transfer rates is a common approach for investigating the electron path from cell to electrode. However, such studies have not explored how the cells’ concurrent morphological adaptations to the applied stresses affect electron transfer rates. In this paper, we establish a ratio to quantify this effect in mediated systems and apply it to Synechococcus elongatus sp. PCC7942 cells grown under different nutritional regimes.