Objective Our study aimed to test in 8years old children born very prematurely whether a faulty primary motor cortex (M1) functioning could parallel visuomotor coordination difficulties. Methods Ten very preterm children (PT; gestational age ⩽32weeks; 6 boys; 8years 6months, SD 4months) were compared to seven healthy term peers (4 boys; 8years 4months, SD 4months). Clinical assessment comprised two standardized tests for motor skills and visuomotor coordination. Transcranial magnetic stimulation (TMS) was applied over M1 area of the preactivated first dorsal interosseous muscle to measure the corticomotor excitability and the short intracortical inhibition (SICI). Results PT scores were significantly lower on the Developmental Test of Visual-Motor Integration (p =0.0018) and on the Movement Assessment Battery for Children (p =0.038). In parallel, the dominant hemisphere worked differently with no SICI in PT (p =0.009) and more variability of corticomotor excitability (p =0.001). Conclusions These intertwined neurophysiological findings suggest that a faulty motor programming in the dominant M1 of PT could explain visuomotor coordination deficits. Significance Our study contributes to the understanding of possible mechanisms that underlie motor difficulties commonly observed in children who were born premature. In addition, the effectiveness of rehabilitation interventions may be better understood by applying TMS as an outcome measure in the future.