This study addresses the problem of wasted transportation capacity in Personal Rapid Transit (PRT) systems. We propose a two-tier transportation model that integrates PRT and capillary transportation systems. We study a related multi-objective empty vehicle redistribution problem that attempts to minimize empty movement and the number of vehicles used. Furthermore, we design a hybrid multi-objective genetic algorithm that integrates multiple crossover operators and linear programming techniques to solve the proposed problem. Evaluations indicate that our algorithm produces satisfactory results, and simulations confirm the efficiency of our proposed two-tier transportation system.