The use of commercially available components enables rapid prototyping and assembling of laboratory scale hybrid test-bed systems, which can be used to evaluate new hybrid configurations. The development of such a test-bed using an off-the-shelf PEM fuel cell, lithium-ion battery and DC/DC converter is presented here, and its application to a hybrid configuration appropriate for an unmanned underwater vehicle is explored. A control algorithm was implemented to regulate the power share between the fuel cell and the battery with a graphical interface to control, record and analyze the electrochemical and thermal parameters of the system. The results demonstrate the applicability of the test-bed and control algorithm for this application, and provide data on the dynamic electrical and thermal behaviour of the hybrid system.