Compact fuel cell system was developed for a portable power generator. The power generator features a polymer electrolyte membrane fuel cell (PEMFC) using a chemical hydride as a hydrogen source. The hydrogen generator extracted hydrogen using a catalytic hydrolysis from a sodium borohydride alkaline solution. A novel concept using an all-in-one reactor was proposed in which a catalyst, hydrogen chamber and byproduct separator were combined in a volume. In addition, the reactor as well as a pump, cooling fans, valves and controller was integrated in a single module. A 100W PEMFC stack was connected with the hydrogen generator and was evaluated at various load conditions. It was verified that the stable hydrogen supply was achieved and the developed system can be used to drive fuel cell-powered unmanned autonomous systems.