Background Mosquitoes are responsible for spreading many diseases and their populations are susceptible to environmental changes. The ecosystems in the Three Gorges Region were probably altered because of changes to the environment during the construction of the Three Gorges Dam (TGD), the world's largest hydroelectric dam by generating capacity. Methods We selected three sites at which to monitor the mosquitoes from 1997 to 2009. We captured adult mosquitoes with battery-powered aspirators fortnightly between May and September of each year in dwellings and sheds. We identified the mosquito species, and examined changes in the species density during the TGD construction. We monitored changes in the species and density of mosquitoes in this area for 13 years during the TGD construction and collected information that could be used to support the control and prevention of mosquito-borne infections. Results We found that the mosquito species composition around the residential areas remained the same, and the density changed gradually during the TGD construction. The changes in the populations tended to be consistent over the years, and the densities were highest in July, and were between 3 and 5 times greater in the sheds than in the dwellings. Conclusions The mosquito species and populations remained stable during the construction of the TGD. The mosquito density may have increased as the reservoir filled, and may have decreased during the clean-up work. Clean-up work may be an effective way to control mosquitoes and prevent mosquito-borne diseases.