Sea ports and the related maritime activities (e.g. shipping, shipbuilding, etc.) are one of the main driver of Europe’s growth, jobs, competitiveness and prosperity. The continuously growth of shipping sectors has however introduced some environmental concerns, particularly with respect to ship-generated waste management. The port of Koper, one of the major ports on the northern Adriatic Coast, is the focus of this study. In this paper, a life cycle assessment was performed to identify and quantify the environmental impacts caused by the ship-generated waste management of port of Koper. Carcinogens substance (e.g. dioxins) and inorganic emissions, especially heavy metals, resulted to be the most critical environmental issues, while the fossil fuels consumption is reduced by recovery of ship-generated oils. Moreover, the final treatment of ship waste was found to be critical phase of the management, and the landfill have a significant contribute to the overall environmental load. These results can be useful in the identification of the best practices and in the implementation of waste management plans in ports.