Update pmc_oa.py
Browse files
pmc_oa.py
CHANGED
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@@ -30,6 +30,8 @@ _URLs = {
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"images": "https://huggingface.co/datasets/axiong/pmc_oa/resolve/main/images.zip",
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# "pmc_oa_beta": "https://huggingface.co/datasets/axiong/pmc_oa/resolve/main/test.jsonl",
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# "pmc_oa": "https://huggingface.co/datasets/axiong/pmc_oa/resolve/main/valid.jsonl",
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"pmc_oa_beta": "https://huggingface.co/datasets/axiong/pmc_oa/resolve/main/pmc_oa_beta.jsonl",
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"pmc_oa": "https://huggingface.co/datasets/axiong/pmc_oa/resolve/main/pmc_oa.jsonl",
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}
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@@ -51,6 +53,10 @@ class PMC_OA(datasets.GeneratorBasedBuilder):
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VERSION = datasets.Version("1.0.0")
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BUILDER_CONFIGS = [
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PMC_OA_Config(
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name="pmc_oa_beta",
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description="<subfigure, caption> pairs. Subfigures detected by a DETR model.",
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@@ -62,7 +68,20 @@ class PMC_OA(datasets.GeneratorBasedBuilder):
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]
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def _info(self):
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if self.config.name == "
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return datasets.DatasetInfo(
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description=_DESCRIPTION,
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features=datasets.Features(
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@@ -94,7 +113,13 @@ class PMC_OA(datasets.GeneratorBasedBuilder):
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def _split_generators(self, dl_manager):
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"""Returns SplitGenerators."""
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downloaded_files = dl_manager.download_and_extract(_URLs)
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if self.config.name == "
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN, gen_kwargs={"filepath": downloaded_files["pmc_oa_beta"], "image_dir": downloaded_files['images']}
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@@ -113,7 +138,18 @@ class PMC_OA(datasets.GeneratorBasedBuilder):
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with jsonlines.open(filepath) as reader:
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for _id, obj in enumerate(reader):
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if self.config.name == "
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relative_image_path = obj['image']
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image_path = os.path.join(image_dir, "caption_T060_filtered_top4_sep_v0_subfigures", relative_image_path)
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caption = obj['caption']
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"images": "https://huggingface.co/datasets/axiong/pmc_oa/resolve/main/images.zip",
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# "pmc_oa_beta": "https://huggingface.co/datasets/axiong/pmc_oa/resolve/main/test.jsonl",
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# "pmc_oa": "https://huggingface.co/datasets/axiong/pmc_oa/resolve/main/valid.jsonl",
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"demo_images": "https://huggingface.co/datasets/axiong/test/resolve/main/images.zip",
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"demo_captions": "https://huggingface.co/datasets/axiong/test/resolve/main/mini_dataset.jsonl",
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"pmc_oa_beta": "https://huggingface.co/datasets/axiong/pmc_oa/resolve/main/pmc_oa_beta.jsonl",
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"pmc_oa": "https://huggingface.co/datasets/axiong/pmc_oa/resolve/main/pmc_oa.jsonl",
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}
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VERSION = datasets.Version("1.0.0")
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BUILDER_CONFIGS = [
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PMC_OA_Config(
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name="demo",
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description="Demo subset to show dataset samples.",
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),
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PMC_OA_Config(
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name="pmc_oa_beta",
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description="<subfigure, caption> pairs. Subfigures detected by a DETR model.",
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]
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def _info(self):
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if self.config.name == "demo":
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return datasets.DatasetInfo(
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description=_DESCRIPTION,
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features=datasets.Features(
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{
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"image": datasets.Value("string"),
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"caption": datasets.Value("string"),
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}
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),
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supervised_keys=None,
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citation=_CITATION,
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homepage=_HOMEPAGE,
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)
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elif self.config.name == "pmc_oa_beta":
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return datasets.DatasetInfo(
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description=_DESCRIPTION,
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features=datasets.Features(
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def _split_generators(self, dl_manager):
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"""Returns SplitGenerators."""
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downloaded_files = dl_manager.download_and_extract(_URLs)
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if self.config.name == "demo":
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN, gen_kwargs={"filepath": downloaded_files["demo_captions"], "image_dir": downloaded_files['demo_images']}
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)
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]
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elif self.config.name == "pmc_oa_beta":
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN, gen_kwargs={"filepath": downloaded_files["pmc_oa_beta"], "image_dir": downloaded_files['images']}
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with jsonlines.open(filepath) as reader:
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for _id, obj in enumerate(reader):
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if self.config.name == "demo":
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relative_image_path = obj['image']
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image_path = os.path.join(image_dir, "images", relative_image_path)
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caption = obj['caption']
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yield _id, {
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"image": {
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"path": image_path,
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"bytes": open(image_path, "rb").read(),
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},
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"caption": caption,
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}
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elif self.config.name == "pmc_oa_beta":
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relative_image_path = obj['image']
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image_path = os.path.join(image_dir, "caption_T060_filtered_top4_sep_v0_subfigures", relative_image_path)
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caption = obj['caption']
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