test_class.declarator: structure1C0A
test_class.modifier: private static
test_class.original_string: private static Structure structure1C0A;
test_class.type: Structure
test_class.var_name: structure1C0A
test_class.declarator: atom412
test_class.modifier: private static
test_class.original_string: private static Atom atom412;
test_class.type: Atom
test_class.var_name: atom412
test_class.declarator: atom5444
test_class.modifier: private static
test_class.original_string: private static Atom atom5444;
test_class.type: Atom
test_class.var_name: atom5444
test_class.declarator: atomToModify
test_class.modifier: private static
test_class.original_string: private static Atom atomToModify;
test_class.type: Atom
test_class.var_name: atomToModify
test_class.file: singa-structure/src/test/java/bio/singa/structure/model/mmtf/MmtfAtomTest.java
test_class.identifier: MmtfAtomTest
test_case.body: @Test
      void getIdentifier() {
          assertEquals(412, (int) atom412.getAtomIdentifier());
          assertEquals(5444, (int) atom5444.getAtomIdentifier());
      }
test_case.class_method_signature: MmtfAtomTest.getIdentifier()
test_case.full_signature: @Test void getIdentifier()
test_case.identifier: getIdentifier
test_case.invocations: assertEquals getAtomIdentifier assertEquals getAtomIdentifier
test_case.modifiers: @Test
test_case.parameters: ()
test_case.return: void
test_case.signature: void getIdentifier()
focal_class.declarator: data
focal_class.modifier: private final
focal_class.original_string: private final StructureDataInterface data;
focal_class.type: StructureDataInterface
focal_class.var_name: data
focal_class.declarator: internalGroupIndex
focal_class.modifier: private final
focal_class.original_string: private final int internalGroupIndex;
focal_class.type: int
focal_class.var_name: internalGroupIndex
focal_class.declarator: groupPositionIndex
focal_class.modifier: private final
focal_class.original_string: private final int groupPositionIndex;
focal_class.type: int
focal_class.var_name: groupPositionIndex
focal_class.declarator: internalAtomIndex
focal_class.modifier: private final
focal_class.original_string: private final int internalAtomIndex;
focal_class.type: int
focal_class.var_name: internalAtomIndex
focal_class.declarator: cachedPosition
focal_class.modifier: private
focal_class.original_string: private Vector3D cachedPosition;
focal_class.type: Vector3D
focal_class.var_name: cachedPosition
focal_class.file: singa-structure/src/main/java/bio/singa/structure/model/mmtf/MmtfAtom.java
focal_class.identifier: MmtfAtom
focal_class.interfaces: implements Atom
focal_class.class_method_signature: MmtfAtom.MmtfAtom(StructureDataInterface data, int internalGroupIndex, int groupPositionIndex, int internalAtomIndex)
focal_class.full_signature:   MmtfAtom(StructureDataInterface data, int internalGroupIndex, int groupPositionIndex, int internalAtomIndex)
focal_class.identifier: MmtfAtom
focal_class.parameters: (StructureDataInterface data, int internalGroupIndex, int groupPositionIndex, int internalAtomIndex)
focal_class.signature:  MmtfAtom(StructureDataInterface data, int internalGroupIndex, int groupPositionIndex, int internalAtomIndex)
focal_class.class_method_signature: MmtfAtom.MmtfAtom(MmtfAtom mmtfAtom)
focal_class.full_signature: public  MmtfAtom(MmtfAtom mmtfAtom)
focal_class.identifier: MmtfAtom
focal_class.modifiers: public
focal_class.parameters: (MmtfAtom mmtfAtom)
focal_class.signature:  MmtfAtom(MmtfAtom mmtfAtom)
focal_class.class_method_signature: MmtfAtom.getAtomIdentifier()
focal_class.full_signature: @Override public Integer getAtomIdentifier()
focal_class.identifier: getAtomIdentifier
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: Integer
focal_class.signature: Integer getAtomIdentifier()
focal_class.class_method_signature: MmtfAtom.getAtomName()
focal_class.full_signature: @Override public String getAtomName()
focal_class.identifier: getAtomName
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String getAtomName()
focal_class.class_method_signature: MmtfAtom.getPosition()
focal_class.full_signature: @Override public Vector3D getPosition()
focal_class.identifier: getPosition
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: Vector3D
focal_class.signature: Vector3D getPosition()
focal_class.class_method_signature: MmtfAtom.setPosition(Vector3D position)
focal_class.full_signature: @Override public void setPosition(Vector3D position)
focal_class.identifier: setPosition
focal_class.modifiers: @Override public
focal_class.parameters: (Vector3D position)
focal_class.return: void
focal_class.signature: void setPosition(Vector3D position)
focal_class.class_method_signature: MmtfAtom.getBFactor()
focal_class.full_signature: @Override public double getBFactor()
focal_class.identifier: getBFactor
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: double
focal_class.signature: double getBFactor()
focal_class.class_method_signature: MmtfAtom.setBFactor(double bFactor)
focal_class.full_signature: @Override public void setBFactor(double bFactor)
focal_class.identifier: setBFactor
focal_class.modifiers: @Override public
focal_class.parameters: (double bFactor)
focal_class.return: void
focal_class.signature: void setBFactor(double bFactor)
focal_class.class_method_signature: MmtfAtom.getElement()
focal_class.full_signature: @Override public Element getElement()
focal_class.identifier: getElement
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: Element
focal_class.signature: Element getElement()
focal_class.class_method_signature: MmtfAtom.getCopy()
focal_class.full_signature: @Override public Atom getCopy()
focal_class.identifier: getCopy
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: Atom
focal_class.signature: Atom getCopy()
focal_class.class_method_signature: MmtfAtom.toString()
focal_class.full_signature: @Override public String toString()
focal_class.identifier: toString
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String toString()
focal_method.body: @Override
      public Integer getAtomIdentifier() {
          return internalAtomIndex + 1;
      }
focal_method.class_method_signature: MmtfAtom.getAtomIdentifier()
focal_method.full_signature: @Override public Integer getAtomIdentifier()
focal_method.identifier: getAtomIdentifier
focal_method.modifiers: @Override public
focal_method.parameters: ()
focal_method.return: Integer
focal_method.signature: Integer getAtomIdentifier()