test_class.declarator: molecule
test_class.modifier: private
test_class.original_string: private MoleculeGraph molecule;
test_class.type: MoleculeGraph
test_class.var_name: molecule
test_class.file: singa-structure/src/test/java/bio/singa/structure/algorithms/fragmentation/RECAPFragmenterTest.java
test_class.identifier: RECAPFragmenterTest
test_case.body: @Test
      void convertToSmiles() {
          RECAPFragmenter recapFragmenter = new RECAPFragmenter(molecule);
          assertEquals(100, recapFragmenter.getUniqueFragments().size());
      }
test_case.class_method_signature: RECAPFragmenterTest.convertToSmiles()
test_case.full_signature: @Test void convertToSmiles()
test_case.identifier: convertToSmiles
test_case.invocations: assertEquals size getUniqueFragments
test_case.modifiers: @Test
test_case.parameters: ()
test_case.return: void
test_case.signature: void convertToSmiles()
focal_class.declarator: logger = LoggerFactory.getLogger(RECAPFragmenter.class)
focal_class.modifier: private static final
focal_class.original_string: private static final Logger logger = LoggerFactory.getLogger(RECAPFragmenter.class);
focal_class.type: Logger
focal_class.var_name: logger
focal_class.declarator: fragmentationRules = new TreeMap<>()
focal_class.modifier: private final
focal_class.original_string: private final TreeMap<Integer, FragmentationRule> fragmentationRules = new TreeMap<>();
focal_class.type: TreeMap<Integer, FragmentationRule>
focal_class.var_name: fragmentationRules
focal_class.declarator: uniqueFragments = new HashSet<>()
focal_class.modifier: private
focal_class.original_string: private Set<MoleculeGraph> uniqueFragments = new HashSet<>();
focal_class.type: Set<MoleculeGraph>
focal_class.var_name: uniqueFragments
focal_class.declarator: molecule
focal_class.modifier: private
focal_class.original_string: private MoleculeGraph molecule;
focal_class.type: MoleculeGraph
focal_class.var_name: molecule
focal_class.declarator: fragmentSpace
focal_class.modifier: private
focal_class.original_string: private DirectedGraph<GenericNode<MoleculeGraph>> fragmentSpace;
focal_class.type: DirectedGraph<GenericNode<MoleculeGraph>>
focal_class.var_name: fragmentSpace
focal_class.file: singa-structure/src/main/java/bio/singa/structure/algorithms/fragmentation/RECAPFragmenter.java
focal_class.identifier: RECAPFragmenter
focal_class.class_method_signature: RECAPFragmenter.RECAPFragmenter(MoleculeGraph molecule)
focal_class.full_signature: public  RECAPFragmenter(MoleculeGraph molecule)
focal_class.identifier: RECAPFragmenter
focal_class.modifiers: public
focal_class.parameters: (MoleculeGraph molecule)
focal_class.signature:  RECAPFragmenter(MoleculeGraph molecule)
focal_class.class_method_signature: RECAPFragmenter.initRules()
focal_class.full_signature: private void initRules()
focal_class.identifier: initRules
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void initRules()
focal_class.class_method_signature: RECAPFragmenter.fragment()
focal_class.full_signature: private void fragment()
focal_class.identifier: fragment
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void fragment()
focal_class.class_method_signature: RECAPFragmenter.getFragmentSpace()
focal_class.full_signature: public DirectedGraph<GenericNode<MoleculeGraph>> getFragmentSpace()
focal_class.identifier: getFragmentSpace
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: DirectedGraph<GenericNode<MoleculeGraph>>
focal_class.signature: DirectedGraph<GenericNode<MoleculeGraph>> getFragmentSpace()
focal_class.class_method_signature: RECAPFragmenter.getUniqueFragments()
focal_class.full_signature: public Set<MoleculeGraph> getUniqueFragments()
focal_class.identifier: getUniqueFragments
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: Set<MoleculeGraph>
focal_class.signature: Set<MoleculeGraph> getUniqueFragments()
focal_class.class_method_signature: RECAPFragmenter.getFragmentSmiles()
focal_class.full_signature: public Map<String, MoleculeGraph> getFragmentSmiles()
focal_class.identifier: getFragmentSmiles
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: Map<String, MoleculeGraph>
focal_class.signature: Map<String, MoleculeGraph> getFragmentSmiles()
focal_method.body: public Set<MoleculeGraph> getUniqueFragments() {
          return uniqueFragments;
      }
focal_method.class_method_signature: RECAPFragmenter.getUniqueFragments()
focal_method.full_signature: public Set<MoleculeGraph> getUniqueFragments()
focal_method.identifier: getUniqueFragments
focal_method.modifiers: public
focal_method.parameters: ()
focal_method.return: Set<MoleculeGraph>
focal_method.signature: Set<MoleculeGraph> getUniqueFragments()