test_class.file: hpg-bigdata-core/src/test/java/org/opencb/hpg/bigdata/core/config/OskarConfigurationTest.java
test_class.identifier: OskarConfigurationTest
test_case.body: @Test
      public void testLoad() throws Exception {
          OskarConfiguration storageConfiguration = OskarConfiguration.load(getClass().getResource("/configuration.yml")
                  .openStream());
          System.out.println("oskarConfiguration = " + storageConfiguration);
      }
test_case.class_method_signature: OskarConfigurationTest.testLoad()
test_case.full_signature: @Test public void testLoad()
test_case.identifier: testLoad
test_case.invocations: load openStream getResource getClass println
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testLoad()
focal_class.declarator: logLevel
focal_class.modifier: private
focal_class.original_string: private String logLevel;
focal_class.type: String
focal_class.var_name: logLevel
focal_class.declarator: logFile
focal_class.modifier: private
focal_class.original_string: private String logFile;
focal_class.type: String
focal_class.var_name: logFile
focal_class.declarator: numThreads
focal_class.modifier: private
focal_class.original_string: private int numThreads;
focal_class.type: int
focal_class.var_name: numThreads
focal_class.declarator: toolFolder
focal_class.modifier: private
focal_class.original_string: private String toolFolder;
focal_class.type: String
focal_class.var_name: toolFolder
focal_class.declarator: cellbase
focal_class.modifier: private
focal_class.original_string: private CellBaseConfiguration cellbase;
focal_class.type: CellBaseConfiguration
focal_class.var_name: cellbase
focal_class.declarator: analysis
focal_class.modifier: private
focal_class.original_string: private AnalysisConfiguration analysis;
focal_class.type: AnalysisConfiguration
focal_class.var_name: analysis
focal_class.file: hpg-bigdata-core/src/main/java/org/opencb/hpg/bigdata/core/config/OskarConfiguration.java
focal_class.identifier: OskarConfiguration
focal_class.class_method_signature: OskarConfiguration.OskarConfiguration()
focal_class.full_signature: public  OskarConfiguration()
focal_class.identifier: OskarConfiguration
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.signature:  OskarConfiguration()
focal_class.class_method_signature: OskarConfiguration.load(InputStream configurationInputStream)
focal_class.full_signature: public static OskarConfiguration load(InputStream configurationInputStream)
focal_class.identifier: load
focal_class.modifiers: public static
focal_class.parameters: (InputStream configurationInputStream)
focal_class.return: OskarConfiguration
focal_class.signature: OskarConfiguration load(InputStream configurationInputStream)
focal_class.class_method_signature: OskarConfiguration.load(InputStream configurationInputStream, String format)
focal_class.full_signature: public static OskarConfiguration load(InputStream configurationInputStream, String format)
focal_class.identifier: load
focal_class.modifiers: public static
focal_class.parameters: (InputStream configurationInputStream, String format)
focal_class.return: OskarConfiguration
focal_class.signature: OskarConfiguration load(InputStream configurationInputStream, String format)
focal_class.class_method_signature: OskarConfiguration.serialize(OutputStream configurationOutputStream)
focal_class.full_signature: public void serialize(OutputStream configurationOutputStream)
focal_class.identifier: serialize
focal_class.modifiers: public
focal_class.parameters: (OutputStream configurationOutputStream)
focal_class.return: void
focal_class.signature: void serialize(OutputStream configurationOutputStream)
focal_class.class_method_signature: OskarConfiguration.toString()
focal_class.full_signature: @Override public String toString()
focal_class.identifier: toString
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String toString()
focal_class.class_method_signature: OskarConfiguration.getNumThreads()
focal_class.full_signature: public int getNumThreads()
focal_class.identifier: getNumThreads
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: int
focal_class.signature: int getNumThreads()
focal_class.class_method_signature: OskarConfiguration.setNumThreads(int numThreads)
focal_class.full_signature: public OskarConfiguration setNumThreads(int numThreads)
focal_class.identifier: setNumThreads
focal_class.modifiers: public
focal_class.parameters: (int numThreads)
focal_class.return: OskarConfiguration
focal_class.signature: OskarConfiguration setNumThreads(int numThreads)
focal_class.class_method_signature: OskarConfiguration.getAnalysis()
focal_class.full_signature: public AnalysisConfiguration getAnalysis()
focal_class.identifier: getAnalysis
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: AnalysisConfiguration
focal_class.signature: AnalysisConfiguration getAnalysis()
focal_class.class_method_signature: OskarConfiguration.setAnalysis(AnalysisConfiguration analysis)
focal_class.full_signature: public OskarConfiguration setAnalysis(AnalysisConfiguration analysis)
focal_class.identifier: setAnalysis
focal_class.modifiers: public
focal_class.parameters: (AnalysisConfiguration analysis)
focal_class.return: OskarConfiguration
focal_class.signature: OskarConfiguration setAnalysis(AnalysisConfiguration analysis)
focal_class.class_method_signature: OskarConfiguration.getLogLevel()
focal_class.full_signature: public String getLogLevel()
focal_class.identifier: getLogLevel
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String getLogLevel()
focal_class.class_method_signature: OskarConfiguration.setLogLevel(String logLevel)
focal_class.full_signature: public OskarConfiguration setLogLevel(String logLevel)
focal_class.identifier: setLogLevel
focal_class.modifiers: public
focal_class.parameters: (String logLevel)
focal_class.return: OskarConfiguration
focal_class.signature: OskarConfiguration setLogLevel(String logLevel)
focal_class.class_method_signature: OskarConfiguration.getLogFile()
focal_class.full_signature: public String getLogFile()
focal_class.identifier: getLogFile
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String getLogFile()
focal_class.class_method_signature: OskarConfiguration.setLogFile(String logFile)
focal_class.full_signature: public OskarConfiguration setLogFile(String logFile)
focal_class.identifier: setLogFile
focal_class.modifiers: public
focal_class.parameters: (String logFile)
focal_class.return: OskarConfiguration
focal_class.signature: OskarConfiguration setLogFile(String logFile)
focal_class.class_method_signature: OskarConfiguration.getToolFolder()
focal_class.full_signature: public String getToolFolder()
focal_class.identifier: getToolFolder
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String getToolFolder()
focal_class.class_method_signature: OskarConfiguration.setToolFolder(String toolFolder)
focal_class.full_signature: public OskarConfiguration setToolFolder(String toolFolder)
focal_class.identifier: setToolFolder
focal_class.modifiers: public
focal_class.parameters: (String toolFolder)
focal_class.return: OskarConfiguration
focal_class.signature: OskarConfiguration setToolFolder(String toolFolder)
focal_class.class_method_signature: OskarConfiguration.getCellbase()
focal_class.full_signature: public CellBaseConfiguration getCellbase()
focal_class.identifier: getCellbase
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: CellBaseConfiguration
focal_class.signature: CellBaseConfiguration getCellbase()
focal_class.class_method_signature: OskarConfiguration.setCellbase(CellBaseConfiguration cellbase)
focal_class.full_signature: public OskarConfiguration setCellbase(CellBaseConfiguration cellbase)
focal_class.identifier: setCellbase
focal_class.modifiers: public
focal_class.parameters: (CellBaseConfiguration cellbase)
focal_class.return: OskarConfiguration
focal_class.signature: OskarConfiguration setCellbase(CellBaseConfiguration cellbase)
focal_method.body: public static OskarConfiguration load(InputStream configurationInputStream) throws IOException {
          return load(configurationInputStream, "yaml");
      }
focal_method.class_method_signature: OskarConfiguration.load(InputStream configurationInputStream)
focal_method.full_signature: public static OskarConfiguration load(InputStream configurationInputStream)
focal_method.identifier: load
focal_method.invocations: load
focal_method.modifiers: public static
focal_method.parameters: (InputStream configurationInputStream)
focal_method.return: OskarConfiguration
focal_method.signature: OskarConfiguration load(InputStream configurationInputStream)