test_class.file: singa-chemistry/src/test/java/bio/singa/chemistry/features/databases/pubchem/PubChemParserServiceTest.java
test_class.identifier: PubChemParserServiceTest
test_case.body: @Test
      @Disabled
      void shouldParseSpecies() {
          SmallMolecule species = PubChemParserService.parse("CID:962");
          // name
          assertEquals("water", species.getNames().iterator().next().toLowerCase());
          // molar mass
          assertEquals(18.015, species.getFeature(MolarMass.class).getValue().doubleValue());
          // molar mass
          assertEquals("O", species.getFeature(Smiles.class).getContent());
          // logP
          assertEquals(-1.38, species.getFeature(LogP.class).getContent().doubleValue());
          // ChEBI identifier
          assertEquals("CHEBI:25805", species.getFeature(ChEBIIdentifier.class).getContent());
          // InChIKey
          assertEquals("TUJKJAMUKRIRHC-UHFFFAOYSA-N", species.getFeature(InChIKey.class).getContent());
      }
test_case.class_method_signature: PubChemParserServiceTest.shouldParseSpecies()
test_case.full_signature: @Test @Disabled void shouldParseSpecies()
test_case.identifier: shouldParseSpecies
test_case.invocations: parse assertEquals toLowerCase next iterator getNames assertEquals doubleValue getValue getFeature assertEquals getContent getFeature assertEquals doubleValue getContent getFeature assertEquals getContent getFeature assertEquals getContent getFeature
test_case.modifiers: @Test @Disabled
test_case.parameters: ()
test_case.return: void
test_case.signature: void shouldParseSpecies()
focal_class.declarator: logger = LoggerFactory.getLogger(PubChemParserService.class)
focal_class.modifier: private static final
focal_class.original_string: private static final Logger logger = LoggerFactory.getLogger(PubChemParserService.class);
focal_class.type: Logger
focal_class.var_name: logger
focal_class.declarator: PUBCHEM_FETCH_URL = "https://pubchem.ncbi.nlm.nih.gov/rest/pug_view/data/compound/%s/XML/"
focal_class.modifier: private static final
focal_class.original_string: private static final String PUBCHEM_FETCH_URL = "https://pubchem.ncbi.nlm.nih.gov/rest/pug_view/data/compound/%s/XML/";
focal_class.type: String
focal_class.var_name: PUBCHEM_FETCH_URL
focal_class.file: singa-chemistry/src/main/java/bio/singa/chemistry/features/databases/pubchem/PubChemParserService.java
focal_class.identifier: PubChemParserService
focal_class.class_method_signature: PubChemParserService.PubChemParserService(PubChemIdentifier identifier)
focal_class.full_signature: public  PubChemParserService(PubChemIdentifier identifier)
focal_class.identifier: PubChemParserService
focal_class.modifiers: public
focal_class.parameters: (PubChemIdentifier identifier)
focal_class.signature:  PubChemParserService(PubChemIdentifier identifier)
focal_class.class_method_signature: PubChemParserService.parse(String pubChemIdentifier)
focal_class.full_signature: public static SmallMolecule parse(String pubChemIdentifier)
focal_class.identifier: parse
focal_class.modifiers: public static
focal_class.parameters: (String pubChemIdentifier)
focal_class.return: SmallMolecule
focal_class.signature: SmallMolecule parse(String pubChemIdentifier)
focal_class.class_method_signature: PubChemParserService.parse(PubChemIdentifier pubChemIdentifier)
focal_class.full_signature: public static SmallMolecule parse(PubChemIdentifier pubChemIdentifier)
focal_class.identifier: parse
focal_class.modifiers: public static
focal_class.parameters: (PubChemIdentifier pubChemIdentifier)
focal_class.return: SmallMolecule
focal_class.signature: SmallMolecule parse(PubChemIdentifier pubChemIdentifier)
focal_class.class_method_signature: PubChemParserService.parse()
focal_class.full_signature: @Override public SmallMolecule parse()
focal_class.identifier: parse
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: SmallMolecule
focal_class.signature: SmallMolecule parse()
focal_class.class_method_signature: PubChemParserService.parseXML()
focal_class.full_signature: private void parseXML()
focal_class.identifier: parseXML
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void parseXML()
focal_class.superclass: extends AbstractXMLParser<SmallMolecule>
focal_method.body: public static SmallMolecule parse(String pubChemIdentifier) {
          return PubChemParserService.parse(new PubChemIdentifier(pubChemIdentifier));
      }
focal_method.class_method_signature: PubChemParserService.parse(String pubChemIdentifier)
focal_method.full_signature: public static SmallMolecule parse(String pubChemIdentifier)
focal_method.identifier: parse
focal_method.invocations: parse
focal_method.modifiers: public static
focal_method.parameters: (String pubChemIdentifier)
focal_method.return: SmallMolecule
focal_method.signature: SmallMolecule parse(String pubChemIdentifier)