test_class.declarator: ad
test_class.modifier: static
test_class.original_string: static AlignmentDataset ad;
test_class.type: AlignmentDataset
test_class.var_name: ad
test_class.declarator: sparkConf
test_class.modifier: static
test_class.original_string: static SparkConf sparkConf;
test_class.type: SparkConf
test_class.var_name: sparkConf
test_class.declarator: sparkSession
test_class.modifier: static
test_class.original_string: static SparkSession sparkSession;
test_class.type: SparkSession
test_class.var_name: sparkSession
test_class.file: hpg-bigdata-core/src/test/java/org/opencb/hpg/bigdata/core/lib/AlignmentDatasetTest.java
test_class.identifier: AlignmentDatasetTest
test_case.body: @Test
      public void mapqFilter() {
          initDataset();
          System.out.println(">>>> Running mappingQualityFilter...");
  
          long count;
  
          System.out.println("-------------------------------------- using mappingQualityFilter");
  
          ad.mappingQualityFilter(">50").show();
  
          System.out.println("--------------------------------------");
      }
test_case.class_method_signature: AlignmentDatasetTest.mapqFilter()
test_case.full_signature: @Test public void mapqFilter()
test_case.identifier: mapqFilter
test_case.invocations: initDataset println println show mappingQualityFilter println
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void mapqFilter()
focal_class.declarator: alignmentParseQuery
focal_class.modifier: private
focal_class.original_string: private AlignmentParseQuery alignmentParseQuery;
focal_class.type: AlignmentParseQuery
focal_class.var_name: alignmentParseQuery
focal_class.declarator: sql
focal_class.modifier: private
focal_class.original_string: private String sql;
focal_class.type: String
focal_class.var_name: sql
focal_class.file: hpg-bigdata-core/src/main/java/org/opencb/hpg/bigdata/core/lib/AlignmentDataset.java
focal_class.identifier: AlignmentDataset
focal_class.class_method_signature: AlignmentDataset.AlignmentDataset(SparkSession sparkSession)
focal_class.full_signature: public  AlignmentDataset(SparkSession sparkSession)
focal_class.identifier: AlignmentDataset
focal_class.modifiers: public
focal_class.parameters: (SparkSession sparkSession)
focal_class.signature:  AlignmentDataset(SparkSession sparkSession)
focal_class.class_method_signature: AlignmentDataset.updateDataset(Query query)
focal_class.full_signature: @Override protected void updateDataset(Query query)
focal_class.identifier: updateDataset
focal_class.modifiers: @Override protected
focal_class.parameters: (Query query)
focal_class.return: void
focal_class.signature: void updateDataset(Query query)
focal_class.class_method_signature: AlignmentDataset.getSql()
focal_class.full_signature: @Override public String getSql()
focal_class.identifier: getSql
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String getSql()
focal_class.class_method_signature: AlignmentDataset.mappingQualityFilter(String value)
focal_class.full_signature: public AlignmentDataset mappingQualityFilter(String value)
focal_class.identifier: mappingQualityFilter
focal_class.modifiers: public
focal_class.parameters: (String value)
focal_class.return: AlignmentDataset
focal_class.signature: AlignmentDataset mappingQualityFilter(String value)
focal_class.class_method_signature: AlignmentDataset.templateLengthFilter(String value)
focal_class.full_signature: public AlignmentDataset templateLengthFilter(String value)
focal_class.identifier: templateLengthFilter
focal_class.modifiers: public
focal_class.parameters: (String value)
focal_class.return: AlignmentDataset
focal_class.signature: AlignmentDataset templateLengthFilter(String value)
focal_class.class_method_signature: AlignmentDataset.alignmentLengthFilter(String value)
focal_class.full_signature: public AlignmentDataset alignmentLengthFilter(String value)
focal_class.identifier: alignmentLengthFilter
focal_class.modifiers: public
focal_class.parameters: (String value)
focal_class.return: AlignmentDataset
focal_class.signature: AlignmentDataset alignmentLengthFilter(String value)
focal_class.class_method_signature: AlignmentDataset.flagFilter(String value)
focal_class.full_signature: public AlignmentDataset flagFilter(String value)
focal_class.identifier: flagFilter
focal_class.modifiers: public
focal_class.parameters: (String value)
focal_class.return: AlignmentDataset
focal_class.signature: AlignmentDataset flagFilter(String value)
focal_class.class_method_signature: AlignmentDataset.flagFilter(String value, Boolean exclude)
focal_class.full_signature: public AlignmentDataset flagFilter(String value, Boolean exclude)
focal_class.identifier: flagFilter
focal_class.modifiers: public
focal_class.parameters: (String value, Boolean exclude)
focal_class.return: AlignmentDataset
focal_class.signature: AlignmentDataset flagFilter(String value, Boolean exclude)
focal_class.superclass: extends ParentDataset<AlignmentDataset>
focal_method.body: public AlignmentDataset mappingQualityFilter(String value) {
          query.put("mapq", value);
          return this;
      }
focal_method.class_method_signature: AlignmentDataset.mappingQualityFilter(String value)
focal_method.full_signature: public AlignmentDataset mappingQualityFilter(String value)
focal_method.identifier: mappingQualityFilter
focal_method.invocations: put
focal_method.modifiers: public
focal_method.parameters: (String value)
focal_method.return: AlignmentDataset
focal_method.signature: AlignmentDataset mappingQualityFilter(String value)